Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 Z73417.1-201ENST00000447373 778 ntBASIC2.98□□□□□ -1.93
SDC1P18827 ARPC3P5-201ENST00000448802 534 ntBASIC2.98□□□□□ -1.93
SDC1P18827 AL353691.1-201ENST00000451332 387 ntBASIC2.98□□□□□ -1.93
SDC1P18827 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC1P18827 CYCSP35-201ENST00000451978 304 ntBASIC2.98□□□□□ -1.93
SDC1P18827 HMGN2P16-201ENST00000456802 261 ntBASIC2.98□□□□□ -1.93
SDC1P18827 snoU13.4-201ENST00000458916 104 ntBASIC2.98□□□□□ -1.93
SDC1P18827 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SDC1P18827 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC2.98□□□□□ -1.93
SDC1P18827 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC1P18827 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC1P18827 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC2.98□□□□□ -1.93
SDC1P18827 AC110794.1-201ENST00000505816 425 ntBASIC2.98□□□□□ -1.93
SDC1P18827 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC2.98□□□□□ -1.93
SDC1P18827 AC093677.1-201ENST00000514414 678 ntBASIC2.98□□□□□ -1.93
SDC1P18827 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC1P18827 RNU6-150P-201ENST00000516237 95 ntBASIC2.98□□□□□ -1.93
SDC1P18827 RN7SKP265-201ENST00000516448 223 ntBASIC2.98□□□□□ -1.93
SDC1P18827 IGHV3-76-201ENST00000522465 295 ntBASIC2.98□□□□□ -1.93
SDC1P18827 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.98□□□□□ -1.93
SDC1P18827 NCAPGP2-201ENST00000557911 754 ntBASIC2.98□□□□□ -1.93
SDC1P18827 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.98□□□□□ -1.93
SDC1P18827 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC2.98□□□□□ -1.93
SDC1P18827 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC2.98□□□□□ -1.93
SDC1P18827 AC061975.8-201ENST00000587058 721 ntBASIC2.98□□□□□ -1.93
SDC1P18827 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.98□□□□□ -1.93
SDC1P18827 AC015967.1-201ENST00000619893 476 ntBASIC2.98□□□□□ -1.93
SDC1P18827 AL360181.4-201ENST00000621752 134 ntBASIC2.98□□□□□ -1.93
SDC1P18827 AL356585.4-201ENST00000623078 1229 ntBASIC2.98□□□□□ -1.93
SDC1P18827 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SDC1P18827 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
SDC1P18827 HSP90AA4P-202ENST00000506915 2228 ntBASIC2.97□□□□□ -1.93
SDC1P18827 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
SDC1P18827 AL356473.1-201ENST00000406203 1408 ntBASIC2.97□□□□□ -1.93
SDC1P18827 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
SDC1P18827 OR1S2-201ENST00000302592 978 ntBASIC2.97□□□□□ -1.93
SDC1P18827 RNA5SP295-201ENST00000362655 121 ntBASIC2.97□□□□□ -1.93
SDC1P18827 RNU6-1155P-201ENST00000363554 107 ntBASIC2.97□□□□□ -1.93
SDC1P18827 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 RNU6-157P-201ENST00000383957 107 ntBASIC2.97□□□□□ -1.93
SDC1P18827 MIR200C-201ENST00000384980 68 ntBASIC2.97□□□□□ -1.93
SDC1P18827 CYCSP45-201ENST00000402289 315 ntBASIC2.97□□□□□ -1.93
SDC1P18827 HMGB1P49-201ENST00000418882 569 ntBASIC2.97□□□□□ -1.93
SDC1P18827 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC2.97□□□□□ -1.93
SDC1P18827 DUTP6-201ENST00000425573 462 ntBASIC2.97□□□□□ -1.93
SDC1P18827 AC097713.2-201ENST00000430199 356 ntBASIC2.97□□□□□ -1.93
SDC1P18827 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC1P18827 MUPP-201ENST00000438111 566 ntBASIC2.97□□□□□ -1.93
SDC1P18827 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 Z75741.1-201ENST00000446793 314 ntBASIC2.97□□□□□ -1.93
SDC1P18827 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC1P18827 BX322784.1-201ENST00000455793 1077 ntBASIC2.97□□□□□ -1.93
SDC1P18827 RPL31P50-201ENST00000471002 296 ntBASIC2.97□□□□□ -1.93
SDC1P18827 RPS4XP13-201ENST00000483219 789 ntBASIC2.97□□□□□ -1.93
SDC1P18827 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.97□□□□□ -1.93
SDC1P18827 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC1P18827 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC1P18827 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.97□□□□□ -1.93
SDC1P18827 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.97□□□□□ -1.93
SDC1P18827 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.97□□□□□ -1.93
SDC1P18827 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 PRELID3BP8-201ENST00000604148 295 ntBASIC2.97□□□□□ -1.93
SDC1P18827 AC006023.2-201ENST00000609916 167 ntBASIC2.97□□□□□ -1.93
SDC1P18827 MIR6798-201ENST00000612887 67 ntBASIC2.97□□□□□ -1.93
SDC1P18827 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.97□□□□□ -1.93
SDC1P18827 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.97□□□□□ -1.93
SDC1P18827 MTND4P34-201ENST00000572715 1371 ntBASIC2.97□□□□□ -1.93
SDC1P18827 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
SDC1P18827 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
SDC1P18827 AC005539.1-201ENST00000443768 1479 ntBASIC2.96□□□□□ -1.93
SDC1P18827 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
SDC1P18827 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
SDC1P18827 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
SDC1P18827 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
SDC1P18827 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
SDC1P18827 FAM133CP-201ENST00000332869 704 ntBASIC2.96□□□□□ -1.94
SDC1P18827 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
SDC1P18827 AC110754.1-201ENST00000399740 601 ntBASIC2.96□□□□□ -1.94
SDC1P18827 RNU2-71P-201ENST00000411395 189 ntBASIC2.96□□□□□ -1.94
SDC1P18827 USP9YP33-201ENST00000412220 421 ntBASIC2.96□□□□□ -1.94
SDC1P18827 RPL22P18-201ENST00000417197 377 ntBASIC2.96□□□□□ -1.94
SDC1P18827 AC069157.1-201ENST00000421749 137 ntBASIC2.96□□□□□ -1.94
SDC1P18827 MTCO2P5-201ENST00000422621 426 ntBASIC2.96□□□□□ -1.94
SDC1P18827 MTND1P32-201ENST00000433043 938 ntBASIC2.96□□□□□ -1.94
SDC1P18827 AL590103.1-201ENST00000434488 307 ntBASIC2.96□□□□□ -1.94
SDC1P18827 USP9YP35-201ENST00000435696 412 ntBASIC2.96□□□□□ -1.94
SDC1P18827 EEF1E1P1-201ENST00000446998 430 ntBASIC2.96□□□□□ -1.94
SDC1P18827 RPL7P52-201ENST00000449200 742 ntBASIC2.96□□□□□ -1.94
SDC1P18827 MTCO3P11-201ENST00000455103 774 ntBASIC2.96□□□□□ -1.94
SDC1P18827 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.96□□□□□ -1.94
SDC1P18827 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC2.96□□□□□ -1.94
SDC1P18827 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.96□□□□□ -1.94
SDC1P18827 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms