Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
TRAV40A0A0B4J280 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
TRAV40A0A0B4J280 AL353746.1-201ENST00000566293 6881 ntBASIC2.37□□□□□ -2.03
TRAV40A0A0B4J280 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.37□□□□□ -2.03
TRAV40A0A0B4J280 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
TRAV40A0A0B4J280 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 OR5J1P-201ENST00000313544 939 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 SNRPEP3-201ENST00000338402 276 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 NACA3P-201ENST00000359690 648 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 RNU6-730P-201ENST00000383954 104 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 RNU6-413P-201ENST00000384115 107 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 SNORA46-201ENST00000384762 135 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 RPL7P8-201ENST00000411964 730 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 RPL31P45-201ENST00000419532 356 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 OFD1P18Y-201ENST00000420889 959 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 MRPS36P1-201ENST00000421291 307 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC087499.2-201ENST00000432861 149 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 ATP5F1P1-201ENST00000433775 569 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 HSD52-202ENST00000436225 772 ntTSL 3 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC241584.1-201ENST00000438469 1241 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 VN1R10P-201ENST00000447106 875 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AL162389.1-201ENST00000449233 177 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 UQCRHP3-201ENST00000451503 251 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 TRGVB-201ENST00000453257 471 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 HMGN3P1-201ENST00000453847 193 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 MTCO3P2-201ENST00000457365 171 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC108734.3-201ENST00000481241 1165 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC108860.1-201ENST00000484521 383 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC118282.1-201ENST00000506408 765 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC027309.2-201ENST00000520566 192 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 OR4A45P-201ENST00000529954 901 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 VN1R90P-201ENST00000595717 726 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC007566.2-201ENST00000603642 413 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC006023.1-201ENST00000603944 259 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC069545.1-201ENST00000605671 358 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC107952.2-201ENST00000606048 486 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC079395.3-201ENST00000615161 484 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 XIST_intron.1-201ENST00000619444 68 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC022509.4-201ENST00000621404 572 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC109454.4-201ENST00000623411 649 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC120349.2-201ENST00000625002 298 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 AC116618.1-201ENST00000634617 774 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 MAPK10-362ENST00000641864 4484 ntBASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
TRAV40A0A0B4J280 ZNF33CP-201ENST00000432492 2030 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 RNU6-339P-201ENST00000384310 107 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 RNU6-636P-201ENST00000384598 107 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 RPL31P1-201ENST00000398116 372 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AL590084.1-201ENST00000407885 387 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AL023807.1-201ENST00000407932 359 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 MIR1289-1-201ENST00000408836 144 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC007390.1-201ENST00000415722 356 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 DUTP6-201ENST00000425573 462 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 COX7BP2-201ENST00000437976 242 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 GAPDHP27-201ENST00000447427 1020 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 RPL29P29-201ENST00000448725 423 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC004924.1-201ENST00000480160 781 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 HSPE1P23-201ENST00000509838 286 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 HIGD1AP13-201ENST00000509878 289 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 FAM60DP-201ENST00000524174 632 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AP001189.2-201ENST00000527320 189 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC005832.3-201ENST00000537929 631 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms