Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 PDSS1P2-201ENST00000449397 678 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AC093392.2-201ENST00000450682 337 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 RPL23AP31-201ENST00000456160 467 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 KCTD9P5-201ENST00000504141 1170 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AC105914.1-201ENST00000511798 226 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 RNU6-579P-201ENST00000516879 102 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AP000926.4-201ENST00000527351 454 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AGGF1P5-201ENST00000567900 919 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 VN1R82P-201ENST00000601481 356 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AP001330.4-201ENST00000604350 154 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AP002782.1-201ENST00000623107 614 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AL034408.1-202ENST00000636088 415 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AC058791.1-201ENST00000608412 3198 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 MAPK10-322ENST00000641485 4530 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 RNA5SP119-201ENST00000362715 117 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 RNU6-83P-201ENST00000384568 112 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 RNA5SP31-201ENST00000411144 127 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AC006960.1-201ENST00000419980 153 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 ZYG11AP1-201ENST00000430329 837 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 RPL23AP22-201ENST00000437556 453 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 RPS3AP12-201ENST00000443616 753 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 RNU6-150P-201ENST00000516237 95 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 SNORD59.2-201ENST00000516873 68 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AC087465.1-201ENST00000560574 245 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AP001029.3-201ENST00000588063 596 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 BNIP3P38-201ENST00000601117 544 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 BDH2P1-201ENST00000602288 736 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 SRGNP1-201ENST00000603392 451 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AL022099.1-201ENST00000604551 712 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AL158042.1-201ENST00000605338 460 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 TUG1_1.1-201ENST00000610654 145 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AP000484.1-201ENST00000620067 1252 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AC023510.2-201ENST00000622162 746 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 AC095031.1-201ENST00000623685 672 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
DDX28Q9NUL7 ZNF285B-201ENST00000561698 1767 ntBASIC3.2□□□□□ -1.9
DDX28Q9NUL7 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 RNU6-173P-201ENST00000364215 104 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 RNA5SP42-201ENST00000364278 115 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 MIR483-201ENST00000385070 76 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AL136372.1-201ENST00000403060 228 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC109780.2-201ENST00000413467 845 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC012498.1-201ENST00000424037 437 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 BX890604.2-201ENST00000427883 474 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 Z80107.1-201ENST00000436830 412 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC004866.2-201ENST00000438285 481 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC009969.1-201ENST00000438726 172 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 MTND5P14-201ENST00000441481 1267 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AL121871.1-201ENST00000443413 436 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 Z73417.1-201ENST00000447373 778 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC010655.1-201ENST00000449336 292 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC140076.1-201ENST00000449897 361 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 BX322784.1-201ENST00000455793 1077 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 RN7SL283P-201ENST00000489055 303 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms