Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC005326.1-201ENST00000429197 123 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AL365396.1-201ENST00000430854 671 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 MTCO1P27-201ENST00000448269 226 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 MEMO1P3-201ENST00000459811 302 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 RN7SL807P-201ENST00000470923 297 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC104563.1-201ENST00000476147 376 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC092451.1-201ENST00000480211 153 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC112198.1-201ENST00000505369 1220 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC010486.2-201ENST00000505572 483 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC005921.1-201ENST00000510589 286 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 RNU6-27P-201ENST00000516146 107 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 RNU2-27P-201ENST00000516185 142 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 RNU6-150P-201ENST00000516237 95 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC109446.2-201ENST00000567872 497 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC012182.1-201ENST00000570133 895 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC006539.2-201ENST00000601729 572 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 VIS1.1-201ENST00000610517 203 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AL607023.1-201ENST00000620045 248 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AL031667.3-201ENST00000620124 655 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AC099063.3-201ENST00000642066 185 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AL021368.2-201ENST00000606125 5352 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 AL022578.1-201ENST00000439330 1433 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 RNU6-433P-201ENST00000363216 104 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 MTHFD2P2-201ENST00000407725 247 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 HSFY4P-201ENST00000415994 1181 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC099677.1-201ENST00000420575 175 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC234781.2-201ENST00000426370 994 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 SDCBPP1-201ENST00000440192 890 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AL591503.2-201ENST00000442314 1005 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 EEF1E1P1-201ENST00000446998 430 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 OR6K5P-201ENST00000447050 945 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC005297.2-201ENST00000450430 606 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 RN7SL93P-201ENST00000463035 293 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC017015.1-201ENST00000477387 286 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 FAM172BP-201ENST00000487497 1089 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 COX7A2P2-201ENST00000505291 250 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 TXNP6-201ENST00000510190 310 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 LTV1P1-201ENST00000510683 1237 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC024589.1-201ENST00000512207 263 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC023141.12-201ENST00000512399 199 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AP004242.1-201ENST00000533701 349 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC135628.1-201ENST00000568867 534 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC005000.2-201ENST00000605468 310 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC055876.5-201ENST00000605667 259 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AL390208.1-201ENST00000605885 644 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC090186.1-201ENST00000605991 572 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC040168.1-201ENST00000623594 991 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC068057.2-201ENST00000624047 895 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 PCMTD1P7-201ENST00000634506 357 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AC007671.2-201ENST00000637344 619 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 AL133383.2-201ENST00000622958 2336 ntBASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC3Q9BQI4 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 AL049780.3-201ENST00000624612 1583 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 SNORA31-201ENST00000362607 130 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 RNA5SP258-201ENST00000362750 119 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 RNU6-335P-201ENST00000364563 113 ntBASIC3.42□□□□□ -1.86
CCDC3Q9BQI4 RNU6-359P-201ENST00000365466 108 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms