Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NDUFB4P6-201ENST00000436819 366 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AL591719.1-201ENST00000444669 744 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC089999.1-201ENST00000460336 374 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 RPL7P5-201ENST00000471472 736 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 RNU6-319P-201ENST00000516025 108 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC084757.1-201ENST00000559987 490 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC2.45□□□□□ -2.02
COL5A3P25940 ISCA1P3-201ENST00000577104 373 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.45□□□□□ -2.02
COL5A3P25940 PSMA6P4-201ENST00000603247 718 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC123786.2-201ENST00000603459 275 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC090953.1-201ENST00000604305 1092 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC005156.1-201ENST00000613371 573 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.45□□□□□ -2.02
COL5A3P25940 AL391597.1-201ENST00000618707 694 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC084768.2-201ENST00000622736 221 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 MIR4278-201ENST00000636094 69 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 MFF-206ENST00000392059 1710 ntTSL 5 BASIC2.45□□□□□ -2.02
COL5A3P25940 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
COL5A3P25940 AC244517.1-201ENST00000606030 2086 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.45□□□□□ -2.02
COL5A3P25940 API5P2-201ENST00000397055 1498 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.45□□□□□ -2.02
COL5A3P25940 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
COL5A3P25940 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL5A3P25940 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL5A3P25940 MIR518E-201ENST00000385252 88 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 RNU2-37P-201ENST00000410695 177 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 RNA5SP344-201ENST00000411081 104 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC2.45□□□□□ -2.02
COL5A3P25940 AC092451.1-201ENST00000480211 153 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.45□□□□□ -2.02
COL5A3P25940 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC2.45□□□□□ -2.02
COL5A3P25940 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC2.45□□□□□ -2.02
COL5A3P25940 TBCAP3-201ENST00000512475 312 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.45□□□□□ -2.02
COL5A3P25940 RN7SKP82-201ENST00000516786 223 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC2.45□□□□□ -2.02
COL5A3P25940 OR4T1P-201ENST00000554933 911 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 MIR4512-201ENST00000583257 77 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 BNIP3P7-201ENST00000605641 516 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC012213.4-201ENST00000606457 354 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC019131.2-201ENST00000609071 870 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC009318.3-201ENST00000616916 503 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.44□□□□□ -2.02
COL5A3P25940 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
COL5A3P25940 AL359715.4-201ENST00000606629 1436 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 Y_RNA.116-201ENST00000363292 103 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 RNA5SP190-201ENST00000365222 118 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 MIR124-3-201ENST00000384866 87 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 RNU4-62P-201ENST00000410125 130 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.44□□□□□ -2.02
COL5A3P25940 AL353729.1-201ENST00000425044 720 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC2.44□□□□□ -2.02
COL5A3P25940 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.44□□□□□ -2.02
COL5A3P25940 XKRYP6-201ENST00000440468 1116 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 XKRYP3-201ENST00000442113 1116 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC2.44□□□□□ -2.02
COL5A3P25940 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC2.44□□□□□ -2.02
COL5A3P25940 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC2.44□□□□□ -2.02
COL5A3P25940 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC2.44□□□□□ -2.02
COL5A3P25940 Y_RNA.670-201ENST00000516255 105 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.44□□□□□ -2.02
COL5A3P25940 NDUFA5P6-201ENST00000542110 379 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC2.44□□□□□ -2.02
COL5A3P25940 RPP40P2-201ENST00000603596 712 ntBASIC2.44□□□□□ -2.02
COL5A3P25940 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.43□□□□□ -2.02
COL5A3P25940 MTND2P2-201ENST00000434633 945 ntBASIC2.43□□□□□ -2.02
COL5A3P25940 HSPE1P28-201ENST00000443139 211 ntBASIC2.43□□□□□ -2.02
COL5A3P25940 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.43□□□□□ -2.02
COL5A3P25940 RSL24D1P2-201ENST00000445584 366 ntBASIC2.43□□□□□ -2.02
COL5A3P25940 AP000873.1-201ENST00000463987 400 ntBASIC2.43□□□□□ -2.02
COL5A3P25940 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC2.43□□□□□ -2.02
COL5A3P25940 ATG10-AS1-201ENST00000504846 648 ntBASIC2.43□□□□□ -2.02
COL5A3P25940 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
COL5A3P25940 RNU6-826P-201ENST00000516827 104 ntBASIC2.43□□□□□ -2.02
COL5A3P25940 AC087241.2-201ENST00000535801 324 ntBASIC2.43□□□□□ -2.02
COL5A3P25940 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.43□□□□□ -2.02
COL5A3P25940 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.43□□□□□ -2.02
COL5A3P25940 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC2.43□□□□□ -2.02
COL5A3P25940 AC110774.1-201ENST00000623567 2018 ntBASIC2.43□□□□□ -2.02
COL5A3P25940 RNA5SP295-201ENST00000362655 121 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 SNORA26.7-201ENST00000391288 122 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.42□□□□□ -2.02
COL5A3P25940 DPPA2P1-201ENST00000428060 556 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.42□□□□□ -2.02
COL5A3P25940 RPS26P30-201ENST00000443431 335 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 RPS27P5-201ENST00000444247 244 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 AC011753.1-201ENST00000451001 220 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 MTAPP1-201ENST00000489154 819 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 AC004486.1-201ENST00000546846 233 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.42□□□□□ -2.02
COL5A3P25940 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.42□□□□□ -2.02
COL5A3P25940 MIR4303-201ENST00000581299 66 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 AC073387.2-201ENST00000604797 784 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 AC034236.3-201ENST00000605999 461 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 AL118508.4-201ENST00000624142 1176 ntBASIC2.42□□□□□ -2.02
COL5A3P25940 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
COL5A3P25940 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
COL5A3P25940 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms