Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC097262.1-201ENST00000452559 548 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 RNU7-136P-201ENST00000458819 69 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 snoU109.4-201ENST00000458953 143 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 RPL21P10-201ENST00000463521 490 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 MTND2P14-201ENST00000482139 351 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 HSPD1P15-201ENST00000505573 1122 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AC021146.1-201ENST00000511202 716 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 EEF1B2P4-201ENST00000551398 348 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AC074050.1-201ENST00000563247 211 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AC022146.1-201ENST00000595307 847 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 XIAPP1-201ENST00000603162 600 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AL450489.1-201ENST00000612071 468 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AL355493.4-201ENST00000618530 292 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AC004009.2-201ENST00000623016 728 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 RNA5SP267-201ENST00000364893 126 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 RNVU1-14-201ENST00000384770 164 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 MIR34B-201ENST00000385076 84 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 RNU2-15P-201ENST00000410692 191 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 USP9YP33-201ENST00000412220 421 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC092447.6-201ENST00000414578 210 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AL953862.1-201ENST00000423016 168 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC010099.3-201ENST00000423896 409 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 USP9YP35-201ENST00000435696 412 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC008264.1-201ENST00000447612 367 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 RSL24D1P3-201ENST00000449255 495 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AL139824.2-201ENST00000458731 1095 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC091153.1-201ENST00000466297 402 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 RPL7P49-201ENST00000471402 708 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 PCBP2P3-201ENST00000509726 843 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC074250.1-201ENST00000511117 192 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 OR4P1P-201ENST00000530808 1136 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC018630.1-201ENST00000541376 925 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC011611.1-201ENST00000552179 197 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC087481.2-201ENST00000565492 330 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 MIR3944-201ENST00000581277 108 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 Z99289.3-201ENST00000605586 594 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AC018755.4-201ENST00000619715 454 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 AL360181.4-201ENST00000621752 134 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 PLCE1P1-201ENST00000622094 305 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 OR4G11P-202ENST00000642116 1414 ntBASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CPSF3Q9UKF6 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CPSF3Q9UKF6 CR383658.2-201ENST00000547576 1525 ntBASIC3.65□□□□□ -1.82
CPSF3Q9UKF6 AL049780.3-201ENST00000624612 1583 ntBASIC3.65□□□□□ -1.82
CPSF3Q9UKF6 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.65□□□□□ -1.82
CPSF3Q9UKF6 AC118273.1-201ENST00000525324 3006 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 MIR208A-201ENST00000362287 71 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 SNORA4.1-201ENST00000364263 144 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 TPMTP2-201ENST00000414372 726 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 OR1AA1P-201ENST00000419597 916 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AC005300.1-201ENST00000428401 373 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 MTND2P19-201ENST00000449129 1012 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 HSPE1P23-201ENST00000509838 286 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 RNU6-150P-201ENST00000516237 95 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 182.3 ms