Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC024560.2-201ENST00000507981 1497 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC095050.2-201ENST00000510748 1458 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC027514.1-201ENST00000588561 1603 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 MTND5P3-201ENST00000438536 1800 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 FRG1BP-201ENST00000278882 761 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 Y_RNA.46-201ENST00000362695 102 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 U3.15-201ENST00000365398 212 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 SNORA70.4-201ENST00000365509 134 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 RNU5A-6P-201ENST00000384136 116 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 RNU6-1215P-201ENST00000384441 102 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 RNA5SP44-201ENST00000410446 133 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 RNU2-66P-201ENST00000410650 161 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AF274854.1-201ENST00000413236 615 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC006548.1-201ENST00000427470 102 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 YME1L1P1-201ENST00000429435 297 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 snoU109.4-201ENST00000458953 143 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 snoU13.22-201ENST00000459428 104 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 RPL7P15-201ENST00000461190 712 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 RNU6-720P-201ENST00000516363 108 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC060771.1-201ENST00000582031 164 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC011468.4-201ENST00000603942 409 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC011451.2-201ENST00000604303 598 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AL031176.1-201ENST00000604554 466 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC121334.2-201ENST00000605387 271 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC069200.1-201ENST00000609511 323 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC068792.1-201ENST00000621354 417 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC244100.1-202ENST00000621554 382 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 CR381572.1-201ENST00000625098 102 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 AC009093.8-201ENST00000641769 292 ntBASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PAAF1Q9BRP4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC074029.4-201ENST00000624796 1859 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 MAPK10-349ENST00000641767 3661 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 OR52B1P-201ENST00000316506 909 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 Y_RNA.3-201ENST00000362331 103 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 RNA5SP119-201ENST00000362715 117 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 RNU6-359P-201ENST00000365466 108 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 SNORD115.1-201ENST00000391109 76 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 RPS3AP36-201ENST00000398190 775 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 Y_RNA.599-201ENST00000410489 109 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 RNU2-47P-201ENST00000410649 186 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AL035423.1-201ENST00000420331 213 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC104651.1-201ENST00000427559 735 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 BX890604.2-201ENST00000427883 474 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 RPL17P49-201ENST00000443728 411 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 MTCYBP1-201ENST00000454315 1119 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 RPL7L1P8-201ENST00000469911 741 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 MTND1P3-201ENST00000484956 952 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC011825.1-201ENST00000484967 388 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC138853.1-201ENST00000503549 823 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 STMN1P2-201ENST00000508435 439 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 TMEM248P1-201ENST00000510579 951 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 RAC1P2-201ENST00000511164 579 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 RNU4-60P-201ENST00000517239 135 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AP003467.2-201ENST00000520175 319 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 MIR3922-201ENST00000585192 84 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 RNU1-30P-201ENST00000606575 163 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC087241.4-201ENST00000612441 480 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.09□□□□□ -1.75
PAAF1Q9BRP4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms