Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 MTCYBP43-201ENST00000513621 740 ntBASIC3.18□□□□□ -1.9
SSX3Q99909 RN7SKP287-201ENST00000516546 266 ntBASIC3.18□□□□□ -1.9
SSX3Q99909 MRPS36P3-201ENST00000519284 130 ntBASIC3.18□□□□□ -1.9
SSX3Q99909 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.18□□□□□ -1.9
SSX3Q99909 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.18□□□□□ -1.9
SSX3Q99909 MIR4425-201ENST00000580572 84 ntBASIC3.18□□□□□ -1.9
SSX3Q99909 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.18□□□□□ -1.9
SSX3Q99909 AC006130.2-201ENST00000586202 326 ntBASIC3.18□□□□□ -1.9
SSX3Q99909 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.18□□□□□ -1.9
SSX3Q99909 AC006539.2-201ENST00000601729 572 ntBASIC3.18□□□□□ -1.9
SSX3Q99909 AC015726.1-201ENST00000602353 681 ntBASIC3.18□□□□□ -1.9
SSX3Q99909 AL590099.1-201ENST00000615276 138 ntBASIC3.18□□□□□ -1.9
SSX3Q99909 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.18□□□□□ -1.9
SSX3Q99909 AC008993.2-201ENST00000631744 806 ntBASIC3.18□□□□□ -1.9
SSX3Q99909 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.18□□□□□ -1.9
SSX3Q99909 AC103706.2-201ENST00000638080 240 ntBASIC3.18□□□□□ -1.9
SSX3Q99909 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SSX3Q99909 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
SSX3Q99909 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
SSX3Q99909 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.17□□□□□ -1.9
SSX3Q99909 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.17□□□□□ -1.9
SSX3Q99909 SNORD113-6-201ENST00000363345 75 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 RNU6-1214P-201ENST00000363650 109 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 RNU6-931P-201ENST00000363850 107 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 Y_RNA.234-201ENST00000364409 97 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 SNORA14A-201ENST00000364773 135 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 SNORA62.3-201ENST00000365110 153 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 CD24P4-201ENST00000382840 243 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SSX3Q99909 HLFP1-201ENST00000402375 499 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 RNU6ATAC-201ENST00000408749 126 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
SSX3Q99909 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.17□□□□□ -1.9
SSX3Q99909 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.17□□□□□ -1.9
SSX3Q99909 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX3Q99909 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX3Q99909 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX3Q99909 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.17□□□□□ -1.9
SSX3Q99909 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.17□□□□□ -1.9
SSX3Q99909 RPL21P8-201ENST00000465083 535 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX3Q99909 AC104563.1-201ENST00000476147 376 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 RN7SL323P-201ENST00000494712 295 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.17□□□□□ -1.9
SSX3Q99909 VN1R104P-201ENST00000505115 1009 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 SAP18P1-201ENST00000512058 390 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.17□□□□□ -1.9
SSX3Q99909 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SSX3Q99909 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.17□□□□□ -1.9
SSX3Q99909 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.17□□□□□ -1.9
SSX3Q99909 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX3Q99909 CYCSP30-201ENST00000546447 172 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX3Q99909 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX3Q99909 AC022968.1-201ENST00000567372 442 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX3Q99909 AL353997.4-201ENST00000586196 166 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.17□□□□□ -1.9
SSX3Q99909 RNU6-88P-201ENST00000606801 100 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 AC079395.3-201ENST00000615161 484 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 AC021755.4-201ENST00000616620 456 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SSX3Q99909 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SSX3Q99909 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SSX3Q99909 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.17□□□□□ -1.9
SSX3Q99909 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
SSX3Q99909 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.17□□□□□ -1.9
SSX3Q99909 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SSX3Q99909 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SSX3Q99909 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SSX3Q99909 RNU6-462P-201ENST00000362659 105 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 MIR30B-201ENST00000384850 88 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 RNA5SP252-201ENST00000391131 119 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 SNORA3.3-201ENST00000408712 125 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 RNU2-43P-201ENST00000410306 190 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 PIGPP2-201ENST00000411569 458 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.16□□□□□ -1.9
SSX3Q99909 GOT2P5-201ENST00000433995 546 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 AC007389.2-201ENST00000434630 306 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 THAP5P1-201ENST00000439089 262 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.16□□□□□ -1.9
SSX3Q99909 AL031183.1-201ENST00000457667 207 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 SNORA84-201ENST00000459229 133 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 AC104685.1-201ENST00000502445 371 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 AC147055.4-201ENST00000504399 745 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.16□□□□□ -1.9
SSX3Q99909 AC026726.1-201ENST00000512859 601 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 AC017037.2-201ENST00000513850 890 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 SNORA3.4-201ENST00000515969 96 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 RNU6-714P-201ENST00000516963 103 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 AC103783.1-201ENST00000520506 373 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.16□□□□□ -1.9
SSX3Q99909 UBTFL10-201ENST00000528532 562 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.16□□□□□ -1.9
SSX3Q99909 AC023538.1-201ENST00000534576 736 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.16□□□□□ -1.9
SSX3Q99909 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.16□□□□□ -1.9
SSX3Q99909 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.16□□□□□ -1.9
SSX3Q99909 OR4H12P-201ENST00000556269 907 ntBASIC3.16□□□□□ -1.9
SSX3Q99909 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 283.8 ms