Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
VPS39Q96JC1 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
VPS39Q96JC1 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 ANKRD36P1-201ENST00000344424 659 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 DEFB108F-201ENST00000344638 222 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 MIR1289-1-201ENST00000408836 144 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 RPL23AP58-201ENST00000440453 469 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC079776.3-201ENST00000450665 370 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 SUMO2P2-201ENST00000456482 255 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 RPL21P13-201ENST00000488305 481 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 RPL7P38-201ENST00000488396 739 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC093663.1-201ENST00000497190 394 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC114967.1-201ENST00000504890 259 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC006499.5-201ENST00000505037 514 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 ARL4AP2-201ENST00000507378 601 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC006445.2-201ENST00000510061 472 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 SNORA67.7-201ENST00000516664 135 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 DEFB108D-201ENST00000527787 222 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 OR7K1P-201ENST00000546439 926 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 MIR5186-201ENST00000577504 120 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 MIR4276-201ENST00000584832 70 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 MIR3922-201ENST00000585192 84 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 DUXAP4-201ENST00000603046 613 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC107294.3-201ENST00000609211 526 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 AL157770.1-201ENST00000623049 439 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC091903.1-201ENST00000624322 454 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC009812.4-201ENST00000569134 1805 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS39Q96JC1 AC008568.2-201ENST00000623862 2313 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS39Q96JC1 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
VPS39Q96JC1 AP003122.5-201ENST00000527668 3766 ntBASIC3.25□□□□□ -1.89
VPS39Q96JC1 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS39Q96JC1 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS39Q96JC1 AC087359.1-201ENST00000508335 1740 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 Z83843.1-201ENST00000604070 3685 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS39Q96JC1 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 RNA5SP139-201ENST00000364340 117 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS39Q96JC1 Y_RNA.408-201ENST00000383987 102 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 MIR506-201ENST00000384998 124 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 OR4K6P-201ENST00000416478 897 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 DPRXP1-201ENST00000426312 460 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 AL050321.1-201ENST00000432363 400 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 HMGN2P31-201ENST00000432430 273 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 AC024082.2-201ENST00000434771 238 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 AC112492.1-201ENST00000449607 712 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 AL009048.1-201ENST00000450437 298 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 snoU109.3-201ENST00000459477 145 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 RPS4XP10-201ENST00000465034 731 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS39Q96JC1 AL359273.1-201ENST00000510918 627 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 AC068657.1-201ENST00000520807 306 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 AC034268.2-201ENST00000571784 482 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 MTND3P13-201ENST00000574391 343 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 MIR3921-201ENST00000577308 85 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 MIR3609-201ENST00000582661 80 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 AL157392.4-201ENST00000609756 345 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 AC109454.4-201ENST00000623411 649 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 AC027309.3-201ENST00000623419 351 ntBASIC3.24□□□□□ -1.89
VPS39Q96JC1 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS39Q96JC1 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS39Q96JC1 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
VPS39Q96JC1 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS39Q96JC1 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS39Q96JC1 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS39Q96JC1 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms