Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AC019159.1-201ENST00000605094 187 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AC010975.3-201ENST00000618727 978 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AP003355.3-201ENST00000623465 114 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AL392088.2-201ENST00000637607 285 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 AL356473.1-201ENST00000406203 1408 ntBASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ZNF540Q8NDQ6 MTND5P27-201ENST00000428871 1720 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 RNU6-216P-201ENST00000363282 104 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 RNU6-707P-201ENST00000364647 95 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 SNORA70.4-201ENST00000365509 134 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC245054.1-201ENST00000420944 258 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AL590233.1-201ENST00000430017 456 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 HMGN2P31-201ENST00000432430 273 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 CYCSP35-201ENST00000451978 304 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC007967.1-201ENST00000455422 1159 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 OR4G11P-201ENST00000492842 939 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC023424.2-201ENST00000493479 777 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC090453.1-201ENST00000495560 436 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 DSTNP2-201ENST00000504533 515 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC112198.1-201ENST00000505369 1220 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 RAC1P5-201ENST00000512182 576 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 MTCO3P27-201ENST00000514397 196 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC112198.4-201ENST00000515450 351 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC104986.1-201ENST00000517978 436 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 CASP1P1-201ENST00000526345 212 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 ACTR3BP3-201ENST00000565577 979 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AL022067.1-201ENST00000602426 454 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 SRGNP1-201ENST00000603392 451 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC090772.4-201ENST00000623599 362 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC107982.1-201ENST00000507171 1300 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 AC005539.1-201ENST00000443768 1479 ntBASIC3.16□□□□□ -1.9
ZNF540Q8NDQ6 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
ZNF540Q8NDQ6 RNU5A-1-201ENST00000362698 116 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 RNU1-105P-201ENST00000363470 161 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 U3.11-201ENST00000364476 212 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 RNU6-198P-201ENST00000384258 104 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 SNORD65.1-201ENST00000390889 71 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AL079342.2-201ENST00000403367 482 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 ATP5A1P2-201ENST00000412323 255 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 RPS7P9-201ENST00000414704 586 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AL356320.2-201ENST00000417263 507 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 RPL23AP83-201ENST00000434984 473 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC090774.1-201ENST00000435925 246 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC093155.1-201ENST00000440164 826 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC009237.8-201ENST00000445492 379 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AL353691.1-201ENST00000451332 387 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC114981.1-201ENST00000503897 678 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 GTF2IP8-201ENST00000560687 584 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 HMGB1P6-201ENST00000569046 646 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC020914.6-201ENST00000594327 272 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC010591.1-201ENST00000603941 649 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC110079.1-202ENST00000635213 138 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 MIR4275-201ENST00000636486 87 ntBASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
ZNF540Q8NDQ6 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms