Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC006378.2-201ENST00000623178 2476 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.84□□□□□ -1.63
HMGB1P09429 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HMGB1P09429 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.84□□□□□ -1.63
HMGB1P09429 RNU6-741P-201ENST00000383889 107 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HMGB1P09429 OR6C69P-201ENST00000394268 893 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 AC108032.1-201ENST00000416706 207 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HMGB1P09429 RPL7P46-201ENST00000425129 740 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 AL358472.1-201ENST00000431295 329 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC4.84□□□□□ -1.63
HMGB1P09429 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.84□□□□□ -1.63
HMGB1P09429 RNU7-59P-201ENST00000459101 61 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 RPL38P1-201ENST00000460914 211 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
HMGB1P09429 AC020893.1-201ENST00000502452 580 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 AC116347.2-201ENST00000514912 523 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 RNU6-1282P-201ENST00000516735 96 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.84□□□□□ -1.63
HMGB1P09429 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
HMGB1P09429 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.84□□□□□ -1.63
HMGB1P09429 AC107016.1-201ENST00000550463 337 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.84□□□□□ -1.63
HMGB1P09429 MIR5684-201ENST00000585074 65 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HMGB1P09429 AC012603.1-201ENST00000606424 528 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC4.84□□□□□ -1.63
HMGB1P09429 AL445567.2-201ENST00000618935 498 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.84□□□□□ -1.63
HMGB1P09429 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HMGB1P09429 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.84□□□□□ -1.63
HMGB1P09429 Z82217.1-201ENST00000625157 8149 ntBASIC4.84□□□□□ -1.63
HMGB1P09429 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
HMGB1P09429 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
HMGB1P09429 AC103988.1-201ENST00000566382 2177 ntBASIC4.84□□□□□ -1.64
HMGB1P09429 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HMGB1P09429 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.83□□□□□ -1.64
HMGB1P09429 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HMGB1P09429 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HMGB1P09429 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HMGB1P09429 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HMGB1P09429 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
HMGB1P09429 RNU6-1035P-201ENST00000384477 107 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 U8.14-201ENST00000390843 143 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 SNORA3C-201ENST00000408792 125 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 RN7SKP33-201ENST00000410942 340 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.83□□□□□ -1.64
HMGB1P09429 AC011233.1-201ENST00000422812 283 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC4.83□□□□□ -1.64
HMGB1P09429 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.83□□□□□ -1.64
HMGB1P09429 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.83□□□□□ -1.64
HMGB1P09429 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.83□□□□□ -1.64
HMGB1P09429 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.83□□□□□ -1.64
HMGB1P09429 SETP11-201ENST00000473027 690 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 AC006483.1-201ENST00000487308 313 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 AC055855.1-201ENST00000489563 579 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.83□□□□□ -1.64
HMGB1P09429 CDC42P4-201ENST00000510507 563 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
HMGB1P09429 AC123904.3-201ENST00000547218 814 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 AP001004.1-201ENST00000582468 324 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.83□□□□□ -1.64
HMGB1P09429 AC008638.3-201ENST00000603341 463 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 PRELID3BP8-201ENST00000604148 295 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 BX323046.1-201ENST00000610145 535 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.83□□□□□ -1.64
HMGB1P09429 AL356863.1-201ENST00000623378 1080 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 AC010608.2-201ENST00000624830 470 ntBASIC4.83□□□□□ -1.64
HMGB1P09429 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.83□□□□□ -1.64
HMGB1P09429 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HMGB1P09429 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HMGB1P09429 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.82□□□□□ -1.64
HMGB1P09429 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 RNU6-270P-201ENST00000364131 105 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 RNU6-278P-201ENST00000390945 109 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 JKAMPP1-201ENST00000413804 919 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.82□□□□□ -1.64
HMGB1P09429 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC4.82□□□□□ -1.64
HMGB1P09429 AL451054.2-201ENST00000420896 202 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 TRIAP1P1-201ENST00000427062 225 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC4.82□□□□□ -1.64
HMGB1P09429 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.82□□□□□ -1.64
HMGB1P09429 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 ARPC3P1-201ENST00000437218 533 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 GAPDHP27-201ENST00000447427 1020 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.82□□□□□ -1.64
HMGB1P09429 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC4.82□□□□□ -1.64
HMGB1P09429 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.82□□□□□ -1.64
HMGB1P09429 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.82□□□□□ -1.64
HMGB1P09429 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.82□□□□□ -1.64
HMGB1P09429 AC010265.1-201ENST00000513509 211 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms