Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC239798.3-201ENST00000454459 408 ntBASIC3.15□□□□□ -1.91
CCDC88BA6NC98 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC88BA6NC98 AC008083.2-201ENST00000546707 476 ntBASIC3.15□□□□□ -1.91
CCDC88BA6NC98 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC88BA6NC98 VN1R74P-201ENST00000613259 503 ntBASIC3.15□□□□□ -1.91
CCDC88BA6NC98 AL512643.1-201ENST00000635735 524 ntBASIC3.15□□□□□ -1.91
CCDC88BA6NC98 AC138649.5-201ENST00000637456 137 ntBASIC3.15□□□□□ -1.91
CCDC88BA6NC98 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC88BA6NC98 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC88BA6NC98 Y_RNA.118-201ENST00000363300 101 ntBASIC3.14□□□□□ -1.91
CCDC88BA6NC98 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC88BA6NC98 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC88BA6NC98 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC88BA6NC98 CDC42P1-201ENST00000456658 548 ntBASIC3.14□□□□□ -1.91
CCDC88BA6NC98 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC88BA6NC98 AC089999.1-201ENST00000460336 374 ntBASIC3.14□□□□□ -1.91
CCDC88BA6NC98 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC88BA6NC98 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC88BA6NC98 AC131902.3-201ENST00000611767 581 ntBASIC3.14□□□□□ -1.91
CCDC88BA6NC98 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.14□□□□□ -1.91
CCDC88BA6NC98 KPNA2P1-201ENST00000458289 1591 ntBASIC3.13□□□□□ -1.91
CCDC88BA6NC98 Y_RNA.508-201ENST00000384502 114 ntBASIC3.13□□□□□ -1.91
CCDC88BA6NC98 AC106901.1-201ENST00000425086 698 ntBASIC3.13□□□□□ -1.91
CCDC88BA6NC98 USP9YP15-201ENST00000442391 422 ntBASIC3.13□□□□□ -1.91
CCDC88BA6NC98 AC090071.1-201ENST00000507713 644 ntBASIC3.13□□□□□ -1.91
CCDC88BA6NC98 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CCDC88BA6NC98 CBX3P4-201ENST00000538909 354 ntBASIC3.13□□□□□ -1.91
CCDC88BA6NC98 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC88BA6NC98 AC007687.1-201ENST00000602704 304 ntBASIC3.13□□□□□ -1.91
CCDC88BA6NC98 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC88BA6NC98 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.13□□□□□ -1.91
CCDC88BA6NC98 Z82209.1-201ENST00000422141 2135 ntBASIC3.13□□□□□ -1.91
CCDC88BA6NC98 CKAP2P1-201ENST00000555477 2049 ntBASIC3.12□□□□□ -1.91
CCDC88BA6NC98 RNY1P10-201ENST00000363268 113 ntBASIC3.12□□□□□ -1.91
CCDC88BA6NC98 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC88BA6NC98 HMGB1P31-201ENST00000437242 427 ntBASIC3.12□□□□□ -1.91
CCDC88BA6NC98 MTND4LP12-201ENST00000448237 295 ntBASIC3.12□□□□□ -1.91
CCDC88BA6NC98 RPS29P12-201ENST00000460178 152 ntBASIC3.12□□□□□ -1.91
CCDC88BA6NC98 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.12□□□□□ -1.91
CCDC88BA6NC98 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC88BA6NC98 AC034268.2-201ENST00000571784 482 ntBASIC3.12□□□□□ -1.91
CCDC88BA6NC98 HMGN2P28-201ENST00000606102 262 ntBASIC3.12□□□□□ -1.91
CCDC88BA6NC98 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
CCDC88BA6NC98 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.12□□□□□ -1.91
CCDC88BA6NC98 MTCO1P6-201ENST00000481192 1384 ntBASIC3.12□□□□□ -1.91
CCDC88BA6NC98 AL139811.1-201ENST00000424779 2299 ntBASIC3.12□□□□□ -1.91
CCDC88BA6NC98 MIRLET7G-201ENST00000362280 84 ntBASIC3.11□□□□□ -1.91
CCDC88BA6NC98 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC88BA6NC98 RNU2-17P-201ENST00000410290 190 ntBASIC3.11□□□□□ -1.91
CCDC88BA6NC98 AL513331.1-201ENST00000411908 397 ntBASIC3.11□□□□□ -1.91
CCDC88BA6NC98 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC88BA6NC98 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC88BA6NC98 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC88BA6NC98 DNAJC19P9-201ENST00000555084 351 ntBASIC3.11□□□□□ -1.91
CCDC88BA6NC98 AC083899.3-201ENST00000603413 594 ntBASIC3.11□□□□□ -1.91
CCDC88BA6NC98 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC88BA6NC98 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC88BA6NC98 SNORA67.5-201ENST00000391036 107 ntBASIC3.1□□□□□ -1.91
CCDC88BA6NC98 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC88BA6NC98 AC079804.2-201ENST00000490376 200 ntBASIC3.1□□□□□ -1.91
CCDC88BA6NC98 AC005840.1-201ENST00000498412 377 ntBASIC3.1□□□□□ -1.91
CCDC88BA6NC98 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.1□□□□□ -1.91
CCDC88BA6NC98 AC126177.3-201ENST00000551839 688 ntBASIC3.1□□□□□ -1.91
CCDC88BA6NC98 RPS3AP4-201ENST00000555161 764 ntBASIC3.1□□□□□ -1.91
CCDC88BA6NC98 AC091046.2-201ENST00000620775 665 ntBASIC3.1□□□□□ -1.91
CCDC88BA6NC98 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC88BA6NC98 AC245100.2-201ENST00000454544 1679 ntBASIC3.1□□□□□ -1.91
CCDC88BA6NC98 FGF7P8-201ENST00000402994 292 ntBASIC3.09□□□□□ -1.91
CCDC88BA6NC98 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC88BA6NC98 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC88BA6NC98 RPS7P5-201ENST00000441482 581 ntBASIC3.09□□□□□ -1.91
CCDC88BA6NC98 AL109741.2-201ENST00000455561 343 ntBASIC3.09□□□□□ -1.91
CCDC88BA6NC98 RPL36AP21-201ENST00000490372 323 ntBASIC3.09□□□□□ -1.91
CCDC88BA6NC98 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC88BA6NC98 AC092954.1-201ENST00000609121 445 ntBASIC3.09□□□□□ -1.91
CCDC88BA6NC98 OR1S1-201ENST00000624470 978 ntBASIC3.09□□□□□ -1.91
CCDC88BA6NC98 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC88BA6NC98 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.09□□□□□ -1.91
CCDC88BA6NC98 Y_RNA.40-201ENST00000362645 93 ntBASIC3.09□□□□□ -1.92
CCDC88BA6NC98 RSL24D1P2-201ENST00000445584 366 ntBASIC3.09□□□□□ -1.92
CCDC88BA6NC98 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC3.09□□□□□ -1.92
CCDC88BA6NC98 AC078918.1-201ENST00000498515 228 ntBASIC3.09□□□□□ -1.92
CCDC88BA6NC98 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.09□□□□□ -1.92
CCDC88BA6NC98 AC012321.1-201ENST00000561622 1588 ntBASIC3.09□□□□□ -1.92
CCDC88BA6NC98 AC002984.1-201ENST00000591692 448 ntBASIC3.09□□□□□ -1.92
CCDC88BA6NC98 AC020895.1-201ENST00000595362 272 ntBASIC3.09□□□□□ -1.92
CCDC88BA6NC98 AC009570.1-201ENST00000609599 745 ntBASIC3.09□□□□□ -1.92
CCDC88BA6NC98 AC034102.8-201ENST00000615146 484 ntBASIC3.09□□□□□ -1.92
CCDC88BA6NC98 AP001148.1-201ENST00000624124 2359 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC88BA6NC98 RNU6-1320P-201ENST00000390838 107 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 RNU6-1269P-201ENST00000391139 107 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC88BA6NC98 NEK4P1-201ENST00000433383 879 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 AL590762.3-201ENST00000436372 640 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 RNU7-95P-201ENST00000459222 64 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 RNU6-599P-201ENST00000459383 107 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 RNU6-1193P-201ENST00000459461 107 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 AC090453.1-201ENST00000495560 436 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 RNA5SP445-201ENST00000515889 115 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms