Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 SUMO2P20-201ENST00000520803 283 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC002400.1-201ENST00000569310 726 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC136618.2-201ENST00000575091 400 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 MIR4999-201ENST00000585029 91 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC072039.2-201ENST00000608883 439 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC063944.3-201ENST00000609969 533 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 AL355816.2-201ENST00000610049 647 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AC012442.3-202ENST00000636742 206 ntBASIC3.82□□□□□ -1.8
VPS28Q9UK41 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS28Q9UK41 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS28Q9UK41 AF117829.1-206ENST00000621883 3802 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 AL513185.3-201ENST00000433335 1300 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 Y_RNA.548-201ENST00000384656 105 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC007066.1-201ENST00000392902 381 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 HSPE1P8-201ENST00000406997 288 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AL591034.1-201ENST00000407447 340 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 AL035423.1-201ENST00000420331 213 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 BX119904.4-201ENST00000424402 301 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AL008629.1-201ENST00000438615 184 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AL117351.1-201ENST00000438864 766 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC104978.1-201ENST00000449387 391 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC006480.1-201ENST00000449887 378 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 MTND1P9-201ENST00000453775 944 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC104308.1-201ENST00000454621 333 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 CBX3P3-201ENST00000508108 532 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 AL121576.1-201ENST00000556055 276 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC090888.2-201ENST00000559765 1144 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC099489.2-201ENST00000574976 260 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC244505.7-201ENST00000599675 272 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AP001429.1-201ENST00000602568 530 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AL158211.4-201ENST00000606988 584 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AL390240.1-201ENST00000612950 384 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AC009464.1-201ENST00000615731 469 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 AL356596.1-201ENST00000624230 379 ntBASIC3.81□□□□□ -1.8
VPS28Q9UK41 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS28Q9UK41 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS28Q9UK41 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS28Q9UK41 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS28Q9UK41 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS28Q9UK41 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS28Q9UK41 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AL672167.1-206ENST00000356293 943 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 Y_RNA.18-201ENST00000362461 102 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 RNA5SP88-201ENST00000365560 109 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 SNORA5A-201ENST00000384111 134 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 RNU6-1200P-201ENST00000384162 107 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 SOD2P1-201ENST00000396543 562 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 RPL7P60-201ENST00000397636 735 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 MTCO1P17-201ENST00000411522 491 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC098592.1-201ENST00000419352 333 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC002075.2-201ENST00000425207 252 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 MTATP6P4-201ENST00000427725 675 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 UBE2FP3-201ENST00000436366 524 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC108734.1-201ENST00000439549 399 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC007967.1-201ENST00000455422 1159 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 ARPC3P2-201ENST00000457786 533 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC091564.1-201ENST00000464563 479 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC034222.1-201ENST00000494052 532 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC106872.3-201ENST00000495104 446 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS28Q9UK41 MTND5P4-201ENST00000514978 288 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 RNU1-95P-201ENST00000516357 160 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 RNU1-128P-201ENST00000516704 160 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 RNU6-1231P-201ENST00000517185 103 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AP001804.3-201ENST00000525146 880 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AP003497.1-201ENST00000528472 562 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms