Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
LHX3Q9UBR4 AC097714.1-201ENST00000511272 1647 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 RNU1-75P-201ENST00000347264 129 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 RNU4-92P-201ENST00000363783 136 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 DEFB109C-201ENST00000382575 264 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 DEFB109B-201ENST00000382656 264 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 SNORA7.4-201ENST00000384249 137 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 Y_RNA.465-201ENST00000384293 102 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 RN7SKP285-201ENST00000410137 318 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 MTATP6P27-201ENST00000416987 621 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AL590233.1-201ENST00000430017 456 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 EZH2P1-201ENST00000431167 291 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 MUPP-201ENST00000438111 566 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 ISCA1P2-201ENST00000438679 421 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 HSPE1P28-201ENST00000443139 211 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 RPL23AP62-201ENST00000463396 453 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 KLHL2P1-201ENST00000508691 521 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 XKRY-201ENST00000510392 1100 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC109445.1-201ENST00000512356 383 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC022861.1-201ENST00000522981 663 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 SETP7-201ENST00000552169 453 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 MTND1P8-201ENST00000571424 950 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC008507.1-201ENST00000587506 734 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC012493.2-201ENST00000595083 291 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AL161756.2-201ENST00000604597 246 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC107075.1-201ENST00000613695 314 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC138932.5-201ENST00000617759 563 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 U7.8-201ENST00000619968 63 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 MIR8057-201ENST00000620957 69 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AL356585.4-201ENST00000623078 1229 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC091903.1-201ENST00000624322 454 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AC073476.4-201ENST00000628409 72 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AL021368.2-201ENST00000606125 5352 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 AL079343.1-201ENST00000572358 1771 ntBASIC3.22□□□□□ -1.89
LHX3Q9UBR4 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.22□□□□□ -1.89
LHX3Q9UBR4 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.89
LHX3Q9UBR4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AP001148.1-201ENST00000624124 2359 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 RNA5SP374-201ENST00000362939 125 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 SNORA9-201ENST00000384215 133 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 RNU6-906P-201ENST00000384700 70 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 DHFRP6-201ENST00000401776 268 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 HMGB1P17-201ENST00000403495 628 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 RNU6-584P-201ENST00000410350 95 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 RPL7P30-201ENST00000420888 709 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AL353678.1-201ENST00000422735 741 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AC079780.1-201ENST00000428259 207 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 ATP5F1P1-201ENST00000433775 569 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AL590103.1-201ENST00000434488 307 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 Z82190.1-201ENST00000454534 490 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 MTND1P16-201ENST00000465177 898 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AC006445.1-201ENST00000491925 405 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AC079395.1-201ENST00000510981 262 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 RNU1-143P-201ENST00000516296 146 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 RN7SKP57-201ENST00000517248 293 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AL512347.1-201ENST00000566420 503 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 U1.23-201ENST00000610293 146 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AL355810.1-201ENST00000614629 552 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 RNU1-68P-201ENST00000615382 146 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 U1.39-201ENST00000621562 146 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AC018692.3-201ENST00000623929 123 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AC231657.1-201ENST00000624313 397 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms