Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC013470.4-201ENST00000619978 986 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 MIR6075-201ENST00000620782 95 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 AL078595.3-201ENST00000623815 1166 ntBASIC2.92□□□□□ -1.94
SKA3Q8IX90 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.92□□□□□ -1.94
SKA3Q8IX90 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.92□□□□□ -1.94
SKA3Q8IX90 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC093908.1-201ENST00000623125 8092 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
SKA3Q8IX90 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 CD2-201ENST00000369477 478 ntTSL 2 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 MIR23B-201ENST00000384832 97 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 MIR7-3-201ENST00000384898 110 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
SKA3Q8IX90 SNORA11-201ENST00000408789 128 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 YME1L1P1-201ENST00000429435 297 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC005019.1-201ENST00000436455 431 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 OFD1P3Y-201ENST00000453312 783 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 RPL21P134-201ENST00000453468 483 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 USP9YP34-201ENST00000453983 808 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 MTND1P16-201ENST00000465177 898 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 RPL21P13-201ENST00000488305 481 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 MTCYBP17-201ENST00000503579 789 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 HMGB1P22-201ENST00000505315 124 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 SNORA31.20-201ENST00000517111 133 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC104986.1-201ENST00000517978 436 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 MTND2P32-201ENST00000521584 1038 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 OR4P1P-201ENST00000530808 1136 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 EEF1B2P4-201ENST00000551398 348 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 MIR4474-201ENST00000579189 78 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC103881.1-201ENST00000603476 538 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 RPL23AP92-201ENST00000603609 255 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 AL450336.1-201ENST00000605180 586 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AP000240.1-201ENST00000609910 452 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC109809.1-201ENST00000619665 545 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC006963.1-201ENST00000624003 1052 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AC090897.3-201ENST00000636973 1157 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.91□□□□□ -1.94
SKA3Q8IX90 AP001350.1-201ENST00000601906 1524 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 AP002907.1-201ENST00000606361 1430 ntBASIC2.91□□□□□ -1.94
SKA3Q8IX90 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
SKA3Q8IX90 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
SKA3Q8IX90 Z83843.1-201ENST00000604070 3685 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
SKA3Q8IX90 RNU1-70P-201ENST00000362618 164 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 CRP-202ENST00000368110 667 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
SKA3Q8IX90 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 RNA5SP171-201ENST00000391071 115 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 TAF9BP1-201ENST00000396646 746 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 RPL5P18-201ENST00000406671 891 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 RNU6-712P-201ENST00000410558 100 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 RNU2-15P-201ENST00000410692 191 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 HMGN1P24-201ENST00000412282 298 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC007899.1-201ENST00000412776 775 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC092447.6-201ENST00000414578 210 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 AL389915.1-201ENST00000422463 466 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 RPL21P66-201ENST00000426566 466 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 SETP8-201ENST00000435341 628 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 YWHAZP7-201ENST00000436906 631 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC2.9□□□□□ -1.95
SKA3Q8IX90 AL445669.2-201ENST00000454425 421 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 RPL18AP17-201ENST00000455326 198 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC010285.1-201ENST00000470580 392 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC006483.1-201ENST00000487308 313 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 RPL7P38-201ENST00000488396 739 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC093278.1-201ENST00000494700 600 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 TMEM251P1-201ENST00000503717 318 ntBASIC2.9□□□□□ -1.95
SKA3Q8IX90 AC021678.1-201ENST00000505195 936 ntBASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms