Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RPL21P24-201ENST00000413752 448 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 E2F6P2-201ENST00000420708 748 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 EI24P4-201ENST00000423683 1078 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 RPS3AP41-201ENST00000462701 778 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC022133.1-201ENST00000490961 571 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 BX510359.5-201ENST00000515651 304 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 RNU6-307P-201ENST00000516743 106 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC103783.1-201ENST00000520506 373 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 PTP4A1P6-201ENST00000531034 478 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 MIR3176-201ENST00000582210 90 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC018462.2-201ENST00000605375 395 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC100812.1-201ENST00000607622 580 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 MIR6128-201ENST00000615528 109 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC007485.1-201ENST00000616755 206 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC074101.1-201ENST00000637861 241 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC023421.1-201ENST00000590535 1785 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC027287.1-201ENST00000553115 1453 ntBASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
UBE3DQ7Z6J8 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AL022311.1-201ENST00000623726 19416 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 RN7SKP153-201ENST00000365026 316 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 DEFB109C-201ENST00000382575 264 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 DEFB109B-201ENST00000382656 264 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 RNU6-946P-201ENST00000383878 107 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 RNU6-339P-201ENST00000384310 107 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AC093655.2-201ENST00000425735 631 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AL360081.1-201ENST00000428299 555 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AL591704.1-201ENST00000432574 275 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 RPS4XP20-201ENST00000505751 772 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AC011411.1-201ENST00000509592 876 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AC098976.1-201ENST00000513014 541 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AC006427.1-201ENST00000514359 712 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AC026801.2-201ENST00000515352 425 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 RNU6-475P-201ENST00000516073 104 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 RN7SKP82-201ENST00000516786 223 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 CYCSP27-201ENST00000527643 293 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 OR8R1P-201ENST00000543943 764 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 MIR5692C1-201ENST00000585309 91 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AC006254.3-201ENST00000603353 884 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AC006157.1-201ENST00000611750 366 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AC022467.1-201ENST00000614738 749 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 MIR6837-201ENST00000620884 64 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 AL031595.2-201ENST00000624215 19071 ntBASIC4.99□□□□□ -1.61
UBE3DQ7Z6J8 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC092747.4-201ENST00000620519 1861 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 OR9K1P-202ENST00000641111 3217 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 RNA5SP90-201ENST00000364801 99 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 SNORA67-201ENST00000384423 137 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 RNU6-393P-201ENST00000384475 107 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 RNU6-1050P-201ENST00000410388 107 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 163.6 ms