Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
SYNE3Q6ZMZ3 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SYNE3Q6ZMZ3 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 RNA5SP167-201ENST00000365461 116 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 RNU6-356P-201ENST00000384140 107 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 SNORD3H-201ENST00000384486 214 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 MT-TH-201ENST00000387441 69 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 SNORA26.8-201ENST00000391306 124 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 MIR1250-201ENST00000408098 113 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 HSFY4P-201ENST00000415994 1181 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 GLRXP1-201ENST00000423261 334 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC006989.1-201ENST00000427212 131 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC006548.1-201ENST00000427470 102 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AL445584.1-201ENST00000431451 330 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AL117351.1-201ENST00000438864 766 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC009961.3-201ENST00000449832 765 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 PPIAP3-201ENST00000450588 505 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 MTCO2P18-201ENST00000457151 658 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 SNORD108-201ENST00000459332 71 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 RPL23AP62-201ENST00000463396 453 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 FTH1P2-201ENST00000466086 412 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC024589.1-201ENST00000512207 263 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC008489.1-201ENST00000524271 483 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 OR5AP1P-201ENST00000529730 940 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AL121576.1-201ENST00000556055 276 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 ACTR3BP3-201ENST00000565577 979 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC007687.1-201ENST00000602704 304 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AL355812.1-201ENST00000603215 216 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AP001981.2-201ENST00000603241 418 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AP000403.1-201ENST00000603349 851 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AC006077.1-201ENST00000604746 343 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 AL596245.1-201ENST00000618994 362 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 CR381572.1-201ENST00000625098 102 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 CR383658.2-201ENST00000547576 1525 ntBASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
SYNE3Q6ZMZ3 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AL359837.1-201ENST00000381357 287 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AL031679.1-201ENST00000400616 525 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 MIR1305-201ENST00000408300 86 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 RPL7P8-201ENST00000411964 730 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 RPL36AP36-201ENST00000418616 301 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 MORF4L1P6-201ENST00000418771 268 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AC007742.1-201ENST00000425789 329 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 ELOCP26-201ENST00000436067 329 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AL512286.1-201ENST00000439244 400 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 MTND1P30-201ENST00000441241 901 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 TRIM60P18-201ENST00000441518 828 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 ZNF114P1-201ENST00000453500 292 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 BX322784.1-201ENST00000455793 1077 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 RPL7P15-201ENST00000461190 712 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AC080014.1-201ENST00000496877 1201 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 RNU1-45P-201ENST00000517191 141 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AC007991.1-201ENST00000522680 631 ntBASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.24□□□□□ -1.73
SYNE3Q6ZMZ3 PCMTD1P2-201ENST00000565017 355 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms