Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC039056.2-201ENST00000622261 511 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 AC005539.1-201ENST00000443768 1479 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.27□□□□□ -1.89
DDX28Q9NUL7 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.27□□□□□ -1.89
DDX28Q9NUL7 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL161912.2-201ENST00000565707 3007 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 RPL23AP57-201ENST00000332361 466 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 RNU6-50P-201ENST00000362356 103 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 SNORA71.3-201ENST00000362582 128 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 RNU6-525P-201ENST00000363685 104 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 ANAPC10P1-201ENST00000395991 556 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL031679.1-201ENST00000400616 525 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 SKINT1L-201ENST00000401057 817 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL356131.1-201ENST00000405826 414 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL354719.1-201ENST00000406535 843 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC245291.1-201ENST00000419501 328 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL139421.1-201ENST00000423010 169 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 CR769776.1-201ENST00000441254 787 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL353691.1-201ENST00000451332 387 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 RPS4XP2-201ENST00000458402 793 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC023424.2-201ENST00000493479 777 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 MLLT10P2-201ENST00000506434 249 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 KLHL2P1-201ENST00000508691 521 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 RNA5SP468-201ENST00000516782 93 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC004024.1-201ENST00000549244 247 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 OR4H12P-201ENST00000556269 907 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC008507.1-201ENST00000587506 734 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC091057.2-201ENST00000602594 792 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC006270.3-201ENST00000605967 1036 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC080013.3-201ENST00000606839 578 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC019176.2-201ENST00000611579 315 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL355810.1-201ENST00000614629 552 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AC013470.4-201ENST00000619978 986 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 FP236240.3-201ENST00000623061 327 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AP000776.1-201ENST00000530032 1663 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 AL645937.1-201ENST00000641739 1652 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 OR4G11P-202ENST00000642116 1414 ntBASIC3.26□□□□□ -1.89
DDX28Q9NUL7 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 DEFB109C-201ENST00000382575 264 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 DEFB109B-201ENST00000382656 264 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 RN7SKP156-201ENST00000410308 342 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 RNU2-47P-201ENST00000410649 186 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 HMGB3P20-201ENST00000417997 600 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AC006989.1-201ENST00000427212 131 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AL591419.1-201ENST00000427423 339 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AL353705.1-201ENST00000433468 480 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 MTCO2P20-201ENST00000437339 673 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 RPS3AP46-201ENST00000448352 682 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 RNU7-136P-201ENST00000458819 69 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 SNORD11.1-201ENST00000459482 85 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 HMGN1P11-201ENST00000508668 303 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 RN7SKP13-201ENST00000515933 244 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 DUXAP2-201ENST00000519198 589 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AC068657.1-201ENST00000520807 306 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 CR383656.7-201ENST00000548164 174 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 MIR5186-201ENST00000577504 120 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AC087499.8-201ENST00000578406 226 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 151.4 ms