Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-374P-201ENST00000364146 108 ntBASIC4.23□□□□□ -1.73
CTCFP49711 RNU1-140P-201ENST00000365040 165 ntBASIC4.23□□□□□ -1.73
CTCFP49711 RNA5SP235-201ENST00000365411 114 ntBASIC4.23□□□□□ -1.73
CTCFP49711 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CTCFP49711 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC4.23□□□□□ -1.73
CTCFP49711 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC4.23□□□□□ -1.73
CTCFP49711 CETN4P-201ENST00000432407 469 ntBASIC4.23□□□□□ -1.73
CTCFP49711 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.23□□□□□ -1.73
CTCFP49711 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.23□□□□□ -1.73
CTCFP49711 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.23□□□□□ -1.73
CTCFP49711 RPS15AP17-201ENST00000470598 390 ntBASIC4.23□□□□□ -1.73
CTCFP49711 UBL5P3-201ENST00000475112 231 ntBASIC4.23□□□□□ -1.73
CTCFP49711 RPS3AP43-201ENST00000479743 781 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC4.23□□□□□ -1.73
CTCFP49711 AC108941.1-201ENST00000502853 530 ntBASIC4.23□□□□□ -1.73
CTCFP49711 OR5H5P-201ENST00000503164 928 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.23□□□□□ -1.73
CTCFP49711 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC4.23□□□□□ -1.73
CTCFP49711 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CTCFP49711 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC4.23□□□□□ -1.73
CTCFP49711 MTCO3P44-201ENST00000510977 541 ntBASIC4.23□□□□□ -1.73
CTCFP49711 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CTCFP49711 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.23□□□□□ -1.73
CTCFP49711 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC104986.1-201ENST00000517978 436 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AP003461.1-201ENST00000528866 78 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC4.23□□□□□ -1.73
CTCFP49711 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
CTCFP49711 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.23□□□□□ -1.73
CTCFP49711 AP004242.1-201ENST00000533701 349 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC022080.3-201ENST00000544433 482 ntBASIC4.23□□□□□ -1.73
CTCFP49711 UBE2NP1-201ENST00000545592 458 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.23□□□□□ -1.73
CTCFP49711 AL133457.1-201ENST00000564251 987 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC145350.1-201ENST00000567426 208 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC4.23□□□□□ -1.73
CTCFP49711 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.23□□□□□ -1.73
CTCFP49711 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.23□□□□□ -1.73
CTCFP49711 CLIC4P2-201ENST00000601934 717 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AL355812.1-201ENST00000603215 216 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AL009028.1-201ENST00000604895 802 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC112220.3-201ENST00000605502 502 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC006270.3-201ENST00000605967 1036 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC243773.3-201ENST00000613270 256 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC090116.1-201ENST00000615679 446 ntBASIC4.23□□□□□ -1.73
CTCFP49711 U73479.1-201ENST00000618062 168 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC097655.1-201ENST00000635075 318 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.23□□□□□ -1.73
CTCFP49711 AL773545.4-201ENST00000637262 310 ntBASIC4.23□□□□□ -1.73
CTCFP49711 U6.101-201ENST00000637707 76 ntBASIC4.23□□□□□ -1.73
CTCFP49711 AL513478.4-201ENST00000641636 310 ntBASIC4.23□□□□□ -1.73
CTCFP49711 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.23□□□□□ -1.73
CTCFP49711 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CTCFP49711 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CTCFP49711 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CTCFP49711 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.23□□□□□ -1.73
CTCFP49711 ZNF542P-204ENST00000482727 1305 ntBASIC4.22□□□□□ -1.73
CTCFP49711 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.22□□□□□ -1.73
CTCFP49711 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.22□□□□□ -1.73
CTCFP49711 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
CTCFP49711 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CTCFP49711 MIR422A-201ENST00000362286 90 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AC244098.2-201ENST00000422068 99 ntBASIC4.22□□□□□ -1.73
CTCFP49711 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.22□□□□□ -1.73
CTCFP49711 YWHAZP7-201ENST00000436906 631 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC4.22□□□□□ -1.73
CTCFP49711 AL356535.1-201ENST00000440335 398 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.22□□□□□ -1.73
CTCFP49711 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.22□□□□□ -1.73
CTCFP49711 RPL23AP62-201ENST00000463396 453 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AC092451.1-201ENST00000480211 153 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.22□□□□□ -1.73
CTCFP49711 AC108078.3-201ENST00000502633 489 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AC006499.2-201ENST00000513470 337 ntBASIC4.22□□□□□ -1.73
CTCFP49711 RNU6-1129P-201ENST00000515964 104 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC4.22□□□□□ -1.73
CTCFP49711 CASC16-202ENST00000563844 610 ntTSL 3 BASIC4.22□□□□□ -1.73
CTCFP49711 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.22□□□□□ -1.73
CTCFP49711 AC022968.1-201ENST00000567372 442 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.22□□□□□ -1.73
CTCFP49711 MIR3162-201ENST00000581818 82 ntBASIC4.22□□□□□ -1.73
CTCFP49711 MIR4637-201ENST00000582405 84 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
CTCFP49711 AC008751.2-201ENST00000597885 980 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AC104662.1-201ENST00000604448 511 ntBASIC4.22□□□□□ -1.73
CTCFP49711 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AC124312.4-201ENST00000605533 310 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AC093732.2-201ENST00000607950 274 ntBASIC4.22□□□□□ -1.73
CTCFP49711 AC128687.2-201ENST00000609657 566 ntBASIC4.22□□□□□ -1.73
CTCFP49711 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CTCFP49711 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CTCFP49711 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
CTCFP49711 AL157700.1-201ENST00000561973 1432 ntBASIC4.21□□□□□ -1.73
CTCFP49711 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.21□□□□□ -1.73
CTCFP49711 MTCO1P23-201ENST00000415223 1526 ntBASIC4.21□□□□□ -1.73
CTCFP49711 ZNF734P-201ENST00000419494 1534 ntBASIC4.21□□□□□ -1.73
CTCFP49711 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.21□□□□□ -1.74
CTCFP49711 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CTCFP49711 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CTCFP49711 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms