Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 DEFB108A-201ENST00000530110 222 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC024224.1-201ENST00000538284 609 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC006960.3-201ENST00000561845 705 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AL157394.1-201ENST00000562983 1224 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC034268.2-201ENST00000571784 482 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 MIR4330-201ENST00000579077 105 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 RN7SL600P-201ENST00000581811 299 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 MIR3138-201ENST00000585238 82 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 VN1R79P-201ENST00000593540 513 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 IPO5P1-202ENST00000600039 287 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 RNU6-87P-201ENST00000607561 108 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AL136295.6-201ENST00000610486 658 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC067931.1-201ENST00000624190 671 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 PISRT1-201ENST00000626175 531 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 SEPT14P19-203ENST00000633205 211 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 OR5AK4P-201ENST00000635912 903 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 AC005832.2-201ENST00000538921 1430 ntBASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIMCH1Q9UPQ0 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 FAM91A3P-201ENST00000456826 2544 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 Y_RNA.46-201ENST00000362695 102 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 MT-TC-201ENST00000387405 66 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 RPL7P25-201ENST00000404151 721 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AL359704.1-201ENST00000411586 781 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 RPS12P5-201ENST00000423449 371 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 RPL23AP38-201ENST00000423801 469 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 DNAJC19P7-201ENST00000428811 344 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC083863.1-201ENST00000438811 231 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC108734.1-201ENST00000439549 399 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 RPL17P49-201ENST00000443728 411 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 GAPDHP17-201ENST00000449858 1001 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 NDUFS5P3-201ENST00000450668 321 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC093392.2-201ENST00000450682 337 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AL121877.1-201ENST00000453704 622 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC133473.1-201ENST00000455173 299 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC091133.4-201ENST00000511142 308 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC005798.1-201ENST00000513715 387 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 RNU6-506P-201ENST00000516553 94 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 RNU6-430P-201ENST00000517078 107 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AP003730.1-201ENST00000524605 285 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AC087883.1-201ENST00000551882 391 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 CKS1BP3-201ENST00000600888 237 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 OR10AB1P-201ENST00000609613 938 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 MIR6868-201ENST00000611215 58 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AL591424.2-201ENST00000617023 128 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AL049555.1-201ENST00000562834 1933 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 AL359893.1-201ENST00000447628 1580 ntBASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.7□□□□□ -1.66
LIMCH1Q9UPQ0 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC095050.2-201ENST00000510748 1458 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 RNU6-97P-201ENST00000363387 104 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 Y_RNA.234-201ENST00000364409 97 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 SNORA70E-201ENST00000384492 135 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 RPL23AP48-201ENST00000406913 488 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AF228730.2-201ENST00000438784 848 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms