Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CR381670.1-201ENST00000624291 1693 ntBASIC3.87□□□□□ -1.79
COL28A1Q2UY09 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL28A1Q2UY09 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AL672167.1-206ENST00000356293 943 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 RNU6-289P-201ENST00000364093 107 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 RNU6-359P-201ENST00000365466 108 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 SNORD116-1-201ENST00000384335 95 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 MIR1302-8-201ENST00000408342 128 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 MIR1179-201ENST00000408703 91 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 TPMTP3-201ENST00000411928 735 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AL159987.2-201ENST00000432754 307 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC098826.1-201ENST00000433943 471 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AL512286.1-201ENST00000439244 400 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 MTND1P30-201ENST00000441241 901 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 CYCSP35-201ENST00000451978 304 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 RNA5SP246-201ENST00000458909 119 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 RPL38P1-201ENST00000460914 211 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 COX7A2P2-201ENST00000505291 250 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC017037.1-201ENST00000508460 471 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AP004247.1-201ENST00000531556 1289 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 MIR3922-201ENST00000585192 84 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC093783.1-201ENST00000612976 329 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC092192.1-201ENST00000633154 1018 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AP003399.1-201ENST00000637534 361 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 OR11H5P-202ENST00000641612 1325 ntBASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.86□□□□□ -1.79
COL28A1Q2UY09 AC244517.1-201ENST00000606030 2086 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 RNA5SP258-201ENST00000362750 119 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 RNU6-263P-201ENST00000363811 107 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 RNU6-501P-201ENST00000364072 100 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 SNORD116-9-201ENST00000384000 95 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 SNORD116-3-201ENST00000384287 95 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 SNORD116-7-201ENST00000384404 95 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 SNORD116-5-201ENST00000384462 95 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AL021407.1-201ENST00000404531 386 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 HSPE1P12-201ENST00000412576 301 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC245052.5-201ENST00000416320 649 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC244098.2-201ENST00000422068 99 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AL365338.1-201ENST00000422282 858 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC244035.1-201ENST00000430042 390 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 LSM1P1-201ENST00000438629 273 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AL831737.1-201ENST00000441288 271 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC118469.1-201ENST00000442943 488 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AL353691.1-201ENST00000451332 387 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AL645939.1-201ENST00000453429 797 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC092754.2-201ENST00000463506 460 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC017015.1-201ENST00000477387 286 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 CYCSP30-201ENST00000546447 172 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC022655.2-201ENST00000577280 318 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC008507.1-201ENST00000587506 734 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AP000403.1-201ENST00000603349 851 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC055876.5-201ENST00000605667 259 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC080013.6-201ENST00000606185 215 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 MIR432-201ENST00000606207 94 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC012603.1-201ENST00000606424 528 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC097468.3-201ENST00000607956 456 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC107214.2-201ENST00000608204 634 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AL356266.1-201ENST00000623311 483 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.85□□□□□ -1.79
COL28A1Q2UY09 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL28A1Q2UY09 AC233263.6-201ENST00000631132 1963 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms