Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC100870.1-201ENST00000522035 505 ntBASIC3.48□□□□□ -1.85
MSH6P52701 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSH6P52701 AC044913.1-201ENST00000557200 430 ntBASIC3.48□□□□□ -1.85
MSH6P52701 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH6P52701 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
MSH6P52701 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH6P52701 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH6P52701 KATNBL1P5-201ENST00000605015 517 ntBASIC3.48□□□□□ -1.85
MSH6P52701 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
MSH6P52701 AC083865.1-201ENST00000636634 831 ntBASIC3.48□□□□□ -1.85
MSH6P52701 AC025125.1-201ENST00000624743 1922 ntBASIC3.48□□□□□ -1.85
MSH6P52701 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.47□□□□□ -1.85
MSH6P52701 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
MSH6P52701 RPL9P7-201ENST00000330965 580 ntBASIC3.47□□□□□ -1.85
MSH6P52701 AL590004.2-201ENST00000404787 371 ntBASIC3.47□□□□□ -1.85
MSH6P52701 AL049737.1-201ENST00000413920 1403 ntBASIC3.47□□□□□ -1.85
MSH6P52701 TATDN1P1-201ENST00000414123 891 ntBASIC3.47□□□□□ -1.85
MSH6P52701 AC234782.4-201ENST00000417646 1048 ntBASIC3.47□□□□□ -1.85
MSH6P52701 RPS27P5-201ENST00000444247 244 ntBASIC3.47□□□□□ -1.85
MSH6P52701 RPL7P52-201ENST00000449200 742 ntBASIC3.47□□□□□ -1.85
MSH6P52701 HMGB1P15-201ENST00000453854 435 ntBASIC3.47□□□□□ -1.85
MSH6P52701 TVP23BP2-201ENST00000455082 615 ntBASIC3.47□□□□□ -1.85
MSH6P52701 AC108860.1-201ENST00000484521 383 ntBASIC3.47□□□□□ -1.85
MSH6P52701 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.47□□□□□ -1.85
MSH6P52701 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.47□□□□□ -1.85
MSH6P52701 SNX5P1-201ENST00000505757 1041 ntBASIC3.47□□□□□ -1.85
MSH6P52701 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.47□□□□□ -1.85
MSH6P52701 RNA5SP281-201ENST00000516504 135 ntBASIC3.47□□□□□ -1.85
MSH6P52701 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC3.47□□□□□ -1.85
MSH6P52701 MTND5P21-201ENST00000531961 522 ntBASIC3.47□□□□□ -1.85
MSH6P52701 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC3.47□□□□□ -1.85
MSH6P52701 OR8L1P-201ENST00000534005 955 ntBASIC3.47□□□□□ -1.85
MSH6P52701 AL133271.1-201ENST00000538229 291 ntBASIC3.47□□□□□ -1.85
MSH6P52701 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.47□□□□□ -1.85
MSH6P52701 AC018630.1-201ENST00000541376 925 ntBASIC3.47□□□□□ -1.85
MSH6P52701 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.47□□□□□ -1.85
MSH6P52701 PCNAP1-202ENST00000595299 752 ntBASIC3.47□□□□□ -1.85
MSH6P52701 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.47□□□□□ -1.85
MSH6P52701 U6.107-201ENST00000637108 79 ntBASIC3.47□□□□□ -1.85
MSH6P52701 AL163152.1-201ENST00000642001 374 ntBASIC3.47□□□□□ -1.85
MSH6P52701 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.47□□□□□ -1.85
MSH6P52701 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
MSH6P52701 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
MSH6P52701 ADAM3A-203ENST00000461344 2157 ntBASIC3.46□□□□□ -1.86
MSH6P52701 AC092881.1-201ENST00000638218 2733 ntBASIC3.46□□□□□ -1.86
MSH6P52701 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
MSH6P52701 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
MSH6P52701 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
MSH6P52701 RNU6-1159P-201ENST00000362933 107 ntBASIC3.46□□□□□ -1.86
MSH6P52701 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
MSH6P52701 MIR124-3-201ENST00000384866 87 ntBASIC3.46□□□□□ -1.86
MSH6P52701 AL355379.1-201ENST00000405542 640 ntBASIC3.46□□□□□ -1.86
MSH6P52701 AC004022.2-201ENST00000413824 193 ntBASIC3.46□□□□□ -1.86
MSH6P52701 AL357078.2-201ENST00000416486 427 ntBASIC3.46□□□□□ -1.86
MSH6P52701 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
MSH6P52701 RPL23AP45-201ENST00000476406 468 ntBASIC3.46□□□□□ -1.86
MSH6P52701 TRBV1-201ENST00000476502 284 ntBASIC3.46□□□□□ -1.86
MSH6P52701 MTATP6P22-201ENST00000507369 598 ntBASIC3.46□□□□□ -1.86
MSH6P52701 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
MSH6P52701 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH6P52701 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH6P52701 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.46□□□□□ -1.86
MSH6P52701 AC090751.1-201ENST00000566966 267 ntBASIC3.46□□□□□ -1.86
MSH6P52701 RPL23AP84-201ENST00000571193 464 ntBASIC3.46□□□□□ -1.86
MSH6P52701 AC084035.1-201ENST00000634543 607 ntBASIC3.46□□□□□ -1.86
MSH6P52701 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.46□□□□□ -1.86
MSH6P52701 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
MSH6P52701 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
MSH6P52701 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
MSH6P52701 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
MSH6P52701 AL161781.1-201ENST00000354277 403 ntBASIC3.45□□□□□ -1.86
MSH6P52701 MTATP6P31-201ENST00000406985 692 ntBASIC3.45□□□□□ -1.86
MSH6P52701 MIR1303-201ENST00000408625 86 ntBASIC3.45□□□□□ -1.86
MSH6P52701 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.45□□□□□ -1.86
MSH6P52701 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC3.45□□□□□ -1.86
MSH6P52701 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC3.45□□□□□ -1.86
MSH6P52701 MRPL50P4-201ENST00000446432 475 ntBASIC3.45□□□□□ -1.86
MSH6P52701 SNORD108-201ENST00000459332 71 ntBASIC3.45□□□□□ -1.86
MSH6P52701 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC3.45□□□□□ -1.86
MSH6P52701 AC068587.2-201ENST00000478386 781 ntBASIC3.45□□□□□ -1.86
MSH6P52701 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.45□□□□□ -1.86
MSH6P52701 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.45□□□□□ -1.86
MSH6P52701 OR5H4P-201ENST00000510851 923 ntBASIC3.45□□□□□ -1.86
MSH6P52701 HIGD1AP10-201ENST00000527837 282 ntBASIC3.45□□□□□ -1.86
MSH6P52701 AP000857.1-201ENST00000532151 543 ntBASIC3.45□□□□□ -1.86
MSH6P52701 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.45□□□□□ -1.86
MSH6P52701 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.45□□□□□ -1.86
MSH6P52701 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.45□□□□□ -1.86
MSH6P52701 AC012119.1-201ENST00000603184 222 ntBASIC3.45□□□□□ -1.86
MSH6P52701 AC069304.3-201ENST00000603938 1084 ntBASIC3.45□□□□□ -1.86
MSH6P52701 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.45□□□□□ -1.86
MSH6P52701 AC069234.5-201ENST00000611056 416 ntBASIC3.45□□□□□ -1.86
MSH6P52701 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.45□□□□□ -1.86
MSH6P52701 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.45□□□□□ -1.86
MSH6P52701 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
MSH6P52701 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSH6P52701 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
MSH6P52701 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.44□□□□□ -1.86
MSH6P52701 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
MSH6P52701 RNU1-91P-201ENST00000364746 163 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms