Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.04□□□□□ -1.6
COL6A1P12109 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.04□□□□□ -1.6
COL6A1P12109 AP000790.1-201ENST00000528891 737 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AP003122.4-201ENST00000530980 758 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.04□□□□□ -1.6
COL6A1P12109 AC005255.1-201ENST00000593748 216 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A1P12109 YWHAQP7-201ENST00000603536 658 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AC009268.2-201ENST00000621925 457 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AC006065.5-201ENST00000623427 349 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 AC112487.2-201ENST00000637950 304 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A1P12109 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
COL6A1P12109 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A1P12109 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC5.04□□□□□ -1.6
COL6A1P12109 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
COL6A1P12109 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A1P12109 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A1P12109 ELL2P4-201ENST00000446870 1376 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 LARP1BP1-201ENST00000506036 1359 ntBASIC5.04□□□□□ -1.6
COL6A1P12109 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
COL6A1P12109 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A1P12109 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A1P12109 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A1P12109 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
COL6A1P12109 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
COL6A1P12109 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
COL6A1P12109 MTND5P3-201ENST00000438536 1800 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 ZNF33BP1-201ENST00000452497 1834 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A1P12109 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
COL6A1P12109 Y_RNA.72-201ENST00000362894 103 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 SNORA63-201ENST00000363450 132 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 Y_RNA.142-201ENST00000363491 102 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 RNU6-1243P-201ENST00000364028 107 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 RNU6-289P-201ENST00000364093 107 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 Y_RNA.460-201ENST00000384255 102 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 PTMAP2-201ENST00000397627 327 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 U3.35-201ENST00000408405 208 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 RNA5SP118-201ENST00000410385 109 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 JKAMPP1-201ENST00000413804 919 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 AC008280.1-201ENST00000418851 412 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A1P12109 SDCBPP2-201ENST00000424643 885 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 RPL31P35-201ENST00000431058 377 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A1P12109 RPEP2-201ENST00000432149 701 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A1P12109 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A1P12109 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A1P12109 RPL23AP33-201ENST00000442301 452 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 RPL21P89-201ENST00000444021 467 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 AC132479.1-201ENST00000449160 144 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A1P12109 AC079804.1-201ENST00000461922 436 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 CREM-226ENST00000469949 721 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A1P12109 AC010301.1-201ENST00000473936 355 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A1P12109 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.03□□□□□ -1.6
COL6A1P12109 RNA5SP497-201ENST00000516081 97 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 Y_RNA.701-201ENST00000516812 110 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.03□□□□□ -1.6
COL6A1P12109 ARL2BPP2-201ENST00000550907 489 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 SULT1C2P1-202ENST00000562418 459 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 RN7SL600P-201ENST00000581811 299 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 RPL7P50-201ENST00000600588 727 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A1P12109 AC113403.1-201ENST00000604910 193 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 RNU6-87P-201ENST00000607561 108 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 MIR6867-201ENST00000610636 67 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC5.03□□□□□ -1.6
COL6A1P12109 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A1P12109 AL157700.1-201ENST00000561973 1432 ntBASIC5.03□□□□□ -1.6
COL6A1P12109 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A1P12109 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A1P12109 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL6A1P12109 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A1P12109 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL6A1P12109 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL6A1P12109 RNU6-1322P-201ENST00000364309 107 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A1P12109 Y_RNA.529-201ENST00000384586 119 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 EIF5P1-201ENST00000400019 1231 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 FAT1P1-201ENST00000406588 507 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 AC007390.1-201ENST00000415722 356 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 AC096632.1-201ENST00000427395 310 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A1P12109 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 RNU7-136P-201ENST00000458819 69 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 AC023194.1-201ENST00000493084 308 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A1P12109 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms