Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MTND5P19-201ENST00000424872 1794 ntBASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC6.58□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 THAP12P4-201ENST00000528321 2266 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Z95331.1-201ENST00000623075 23112 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC114546.3-201ENST00000623582 1734 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-730P-201ENST00000383954 104 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR514A2-201ENST00000385131 88 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR514A3-201ENST00000385132 88 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MT-TP-201ENST00000387461 68 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 SNORA48.4-201ENST00000391089 134 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR548K-201ENST00000408406 116 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR548F5-201ENST00000408421 86 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-193P-201ENST00000410977 107 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC074085.1-201ENST00000413598 418 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL356968.1-201ENST00000416622 474 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 COX6CP13-201ENST00000428703 226 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC079781.2-201ENST00000446424 169 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC090686.1-201ENST00000481577 749 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Y_RNA.668-201ENST00000516233 93 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Y_RNA.682-201ENST00000516457 100 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AP000827.1-201ENST00000527814 258 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 NDUFB4P11-201ENST00000560510 395 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR548Y-201ENST00000582739 110 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ZYXP1-201ENST00000617638 118 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC011755.1-201ENST00000623763 2049 ntBASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 SNORA19-201ENST00000384737 128 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CRYBB2P1-203ENST00000415709 538 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL34P6-201ENST00000432390 345 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 SLC25A18P1-201ENST00000449385 454 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL935212.3-201ENST00000450729 284 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MRPS31P2-201ENST00000451581 518 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC097484.1-201ENST00000471148 389 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL049874.2-201ENST00000492636 288 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC110794.1-201ENST00000505816 425 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ENPP7P11-201ENST00000505915 627 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-1334P-201ENST00000516032 105 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Y_RNA.665-201ENST00000516177 98 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-864P-201ENST00000516256 108 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AP001804.2-201ENST00000533932 910 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC068831.4-201ENST00000556118 109 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL049839.1-201ENST00000556151 657 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC121334.2-201ENST00000605387 271 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC007546.1-201ENST00000619452 559 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC093909.5-201ENST00000621839 1799 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL049641.1-201ENST00000441055 1948 ntBASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-99P-201ENST00000364721 107 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-169P-201ENST00000365336 107 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-606P-201ENST00000384721 111 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL31P52-201ENST00000407532 367 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RN7SKP158-201ENST00000410453 326 ntBASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms