Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC5.22□□□□□ -1.57
COL8A1P27658 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
COL8A1P27658 AC008725.1-201ENST00000605123 2263 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.22□□□□□ -1.57
COL8A1P27658 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL8A1P27658 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
COL8A1P27658 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.21□□□□□ -1.57
COL8A1P27658 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.57
COL8A1P27658 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.21□□□□□ -1.57
COL8A1P27658 EOGT-210ENST00000615922 1931 ntBASIC5.21□□□□□ -1.57
COL8A1P27658 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
COL8A1P27658 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.21□□□□□ -1.58
COL8A1P27658 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.21□□□□□ -1.58
COL8A1P27658 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL8A1P27658 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL8A1P27658 RPL23P2-201ENST00000320371 421 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL8A1P27658 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL8A1P27658 SNORA43.1-201ENST00000364863 140 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 RNU6-1329P-201ENST00000365664 107 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL8A1P27658 RNU6-658P-201ENST00000384606 106 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 Y_RNA.568-201ENST00000384742 113 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 AC009804.1-201ENST00000400949 179 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 Y_RNA.592-201ENST00000410274 109 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC5.21□□□□□ -1.58
COL8A1P27658 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.21□□□□□ -1.58
COL8A1P27658 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.21□□□□□ -1.58
COL8A1P27658 AC007098.1-201ENST00000420122 367 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 RPL7L1P9-201ENST00000431298 745 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.21□□□□□ -1.58
COL8A1P27658 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.21□□□□□ -1.58
COL8A1P27658 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.21□□□□□ -1.58
COL8A1P27658 AC074133.1-201ENST00000515696 183 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 RNU6-615P-201ENST00000516065 106 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 RNU6-64P-201ENST00000517119 105 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 AC109479.2-201ENST00000517842 174 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 AC093023.1-201ENST00000547375 507 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 AMZ2P1-203ENST00000565833 850 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.21□□□□□ -1.58
COL8A1P27658 AC091193.1-201ENST00000604640 448 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 AC008962.1-201ENST00000605729 304 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 AL591516.1-201ENST00000611326 274 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC5.21□□□□□ -1.58
COL8A1P27658 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC5.21□□□□□ -1.58
COL8A1P27658 MIR6837-201ENST00000620884 64 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.21□□□□□ -1.58
COL8A1P27658 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL8A1P27658 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC5.21□□□□□ -1.58
COL8A1P27658 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.21□□□□□ -1.58
COL8A1P27658 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.21□□□□□ -1.58
COL8A1P27658 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL8A1P27658 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL8A1P27658 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL8A1P27658 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
COL8A1P27658 HSPD1P8-201ENST00000400121 1658 ntBASIC5.21□□□□□ -1.58
COL8A1P27658 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC5.21□□□□□ -1.58
COL8A1P27658 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL8A1P27658 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL8A1P27658 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
COL8A1P27658 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.21□□□□□ -1.58
COL8A1P27658 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL8A1P27658 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.2□□□□□ -1.58
COL8A1P27658 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
COL8A1P27658 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.2□□□□□ -1.58
COL8A1P27658 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
COL8A1P27658 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.2□□□□□ -1.58
COL8A1P27658 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 AC062029.1-202ENST00000606164 3651 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 XIAPP3-201ENST00000312918 795 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.2□□□□□ -1.58
COL8A1P27658 Y_RNA.586-201ENST00000391146 98 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 PRRC2CP1-201ENST00000404428 159 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 RNU4-64P-201ENST00000410795 131 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC5.2□□□□□ -1.58
COL8A1P27658 AC092423.1-201ENST00000430165 186 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 AL162725.1-201ENST00000435405 301 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 CEACAMP9-201ENST00000442990 513 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.2□□□□□ -1.58
COL8A1P27658 AC016027.4-201ENST00000450866 277 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 RNU7-138P-201ENST00000459479 64 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 AC100832.1-201ENST00000471945 383 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms