Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.69□□□□□ -1.66
HLA-DOAP06340 RN7SKP96-201ENST00000516948 297 ntBASIC4.69□□□□□ -1.66
HLA-DOAP06340 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.69□□□□□ -1.66
HLA-DOAP06340 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.69□□□□□ -1.66
HLA-DOAP06340 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DOAP06340 YPEL5P3-201ENST00000547227 352 ntBASIC4.69□□□□□ -1.66
HLA-DOAP06340 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.69□□□□□ -1.66
HLA-DOAP06340 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.69□□□□□ -1.66
HLA-DOAP06340 AC022968.1-201ENST00000567372 442 ntBASIC4.69□□□□□ -1.66
HLA-DOAP06340 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.69□□□□□ -1.66
HLA-DOAP06340 MIR4307-201ENST00000582802 84 ntBASIC4.69□□□□□ -1.66
HLA-DOAP06340 AC006504.3-201ENST00000586818 523 ntBASIC4.69□□□□□ -1.66
HLA-DOAP06340 AC104458.1-201ENST00000608243 463 ntBASIC4.69□□□□□ -1.66
HLA-DOAP06340 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.69□□□□□ -1.66
HLA-DOAP06340 AP001506.1-201ENST00000615444 211 ntBASIC4.69□□□□□ -1.66
HLA-DOAP06340 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC4.69□□□□□ -1.66
HLA-DOAP06340 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.69□□□□□ -1.66
HLA-DOAP06340 CR392039.5-201ENST00000623201 510 ntBASIC4.69□□□□□ -1.66
HLA-DOAP06340 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DOAP06340 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HLA-DOAP06340 OR4G11P-202ENST00000642116 1414 ntBASIC4.69□□□□□ -1.66
HLA-DOAP06340 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.69□□□□□ -1.66
HLA-DOAP06340 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 Y_RNA.38-201ENST00000362617 102 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 Y_RNA.296-201ENST00000364930 108 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 Y_RNA.409-201ENST00000383990 98 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 MIR200C-201ENST00000384980 68 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 MTCO3P40-201ENST00000392516 676 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DOAP06340 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 USP9YP36-201ENST00000424581 829 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 MTCO1P27-201ENST00000448269 226 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AL500522.2-201ENST00000448562 343 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 RPL7P15-201ENST00000461190 712 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC017015.1-201ENST00000477387 286 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC009646.1-201ENST00000510455 318 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC026412.2-201ENST00000512270 1075 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 Y_RNA.704-201ENST00000516851 102 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 SOD1P3-201ENST00000518682 454 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC104383.1-201ENST00000530297 370 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC022878.1-201ENST00000530684 149 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AL389895.1-201ENST00000554127 252 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 CYP4A43P-201ENST00000568156 121 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AL031666.3-201ENST00000609320 1006 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC005344.1-201ENST00000613391 459 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC009237.17-201ENST00000618111 748 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC136475.10-201ENST00000620253 385 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC039056.2-201ENST00000622261 511 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC110994.2-201ENST00000635481 492 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AL354685.2-201ENST00000448218 1447 ntBASIC4.68□□□□□ -1.66
HLA-DOAP06340 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.68□□□□□ -1.66
HLA-DOAP06340 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DOAP06340 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HLA-DOAP06340 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DOAP06340 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DOAP06340 Y_RNA.813-201ENST00000364639 102 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 RNY4P34-201ENST00000364779 95 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 RNU6-114P-201ENST00000384704 105 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 MIR670-201ENST00000390142 98 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 SNORA3.3-201ENST00000408712 125 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 SNORA3C-201ENST00000408792 125 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC008280.1-201ENST00000418851 412 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 AL513174.1-201ENST00000423182 629 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 SDCBPP2-201ENST00000424643 885 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 USP12PX-201ENST00000432383 1057 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC023347.2-201ENST00000433994 462 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC098614.3-201ENST00000438957 440 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 NOTCH2P1-201ENST00000443481 624 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC019235.1-201ENST00000503847 207 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 ARL4AP2-201ENST00000507378 601 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC017037.1-201ENST00000508460 471 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 RPS27AP18-201ENST00000515536 459 ntBASIC4.67□□□□□ -1.66
HLA-DOAP06340 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC4.67□□□□□ -1.66
HLA-DOAP06340 MTCO2P4-201ENST00000517968 247 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms