Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RPS15AP17-201ENST00000470598 390 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC104090.1-201ENST00000506341 1171 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC022022.2-201ENST00000602989 360 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AP000484.1-201ENST00000620067 1252 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 MIR1322-201ENST00000638013 71 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 MTCO1P23-201ENST00000415223 1526 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC004925.1-201ENST00000624256 2706 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AL356274.2-201ENST00000624379 3752 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 HIGD1AP15-201ENST00000416198 280 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC068533.1-201ENST00000418542 415 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AL662791.1-201ENST00000441992 928 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 PRDX3P3-201ENST00000447765 522 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC112673.1-201ENST00000513168 575 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 RN7SKP287-201ENST00000516546 266 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 RNU6-1231P-201ENST00000517185 103 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC104986.1-201ENST00000517978 436 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC023050.2-201ENST00000544968 387 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC009097.3-201ENST00000563557 1018 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AL158211.1-201ENST00000566763 763 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 MIR4738-201ENST00000579134 87 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC067852.3-201ENST00000589177 561 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC025588.2-201ENST00000604851 466 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC093424.1-201ENST00000604999 338 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC063944.3-201ENST00000609969 533 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC097478.2-201ENST00000610572 514 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC019176.2-201ENST00000611579 315 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 AC022149.2-201ENST00000621061 203 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 CYP3A51P-201ENST00000633513 256 ntBASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CPSF3Q9UKF6 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 GDI2P1-201ENST00000429312 1336 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AL645937.1-201ENST00000641739 1652 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 MIR7-3-201ENST00000384898 110 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 RNU6-821P-201ENST00000390995 107 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 BX842559.1-201ENST00000419615 532 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 RPL7P52-201ENST00000449200 742 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 RPL26P28-201ENST00000451325 435 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AC010587.2-201ENST00000511727 448 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 RNU6-583P-201ENST00000516012 92 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 IGKV2-26-201ENST00000518305 343 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AC245036.5-201ENST00000596330 847 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AC009220.3-201ENST00000604318 586 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AL159169.3-201ENST00000608871 561 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AC243773.3-201ENST00000613270 256 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AP002782.1-201ENST00000623107 614 ntBASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 237.3 ms