Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ART2BP-201ENST00000453501 499 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
USP28Q96RU2 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.67□□□□□ -1.82
USP28Q96RU2 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.67□□□□□ -1.82
USP28Q96RU2 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.67□□□□□ -1.82
USP28Q96RU2 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.67□□□□□ -1.82
USP28Q96RU2 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.67□□□□□ -1.82
USP28Q96RU2 HIGD1AP10-201ENST00000527837 282 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 MTCYBP41-201ENST00000528913 1123 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.67□□□□□ -1.82
USP28Q96RU2 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.67□□□□□ -1.82
USP28Q96RU2 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.67□□□□□ -1.82
USP28Q96RU2 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.67□□□□□ -1.82
USP28Q96RU2 ZNF415P1-201ENST00000582279 1166 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.67□□□□□ -1.82
USP28Q96RU2 AC097065.2-201ENST00000608159 533 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 AC093783.1-201ENST00000612976 329 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.67□□□□□ -1.82
USP28Q96RU2 AC023158.2-201ENST00000614876 543 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.67□□□□□ -1.82
USP28Q96RU2 AL355365.1-201ENST00000616480 294 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 AL731566.2-201ENST00000618971 317 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.67□□□□□ -1.82
USP28Q96RU2 AC009039.2-201ENST00000624524 529 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.67□□□□□ -1.82
USP28Q96RU2 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
USP28Q96RU2 AC109315.1-201ENST00000584143 1347 ntBASIC3.67□□□□□ -1.82
USP28Q96RU2 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP28Q96RU2 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP28Q96RU2 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.66□□□□□ -1.82
USP28Q96RU2 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.66□□□□□ -1.82
USP28Q96RU2 OR5H2-201ENST00000355273 945 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
USP28Q96RU2 RNY3P9-201ENST00000384727 106 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AP000567.1-201ENST00000406413 156 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AC007390.1-201ENST00000415722 356 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.66□□□□□ -1.82
USP28Q96RU2 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 UBE2V1P1-201ENST00000430836 445 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 RPS6P15-201ENST00000431996 751 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.66□□□□□ -1.82
USP28Q96RU2 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.66□□□□□ -1.82
USP28Q96RU2 MTND1P32-201ENST00000433043 938 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 SEPT7P5-201ENST00000434048 306 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.66□□□□□ -1.82
USP28Q96RU2 AL008629.1-201ENST00000438615 184 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 NF1P3-201ENST00000457709 450 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 RPL5P24-201ENST00000463742 885 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 ST13P14-201ENST00000474095 734 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 MTND2P14-201ENST00000482139 351 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.66□□□□□ -1.82
USP28Q96RU2 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USP28Q96RU2 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.66□□□□□ -1.82
USP28Q96RU2 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USP28Q96RU2 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USP28Q96RU2 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.66□□□□□ -1.82
USP28Q96RU2 AC048346.1-201ENST00000510247 144 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.66□□□□□ -1.82
USP28Q96RU2 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USP28Q96RU2 HIGD1AP6-201ENST00000521833 279 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.66□□□□□ -1.82
USP28Q96RU2 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.66□□□□□ -1.82
USP28Q96RU2 AC007834.2-201ENST00000536310 343 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.66□□□□□ -1.82
USP28Q96RU2 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USP28Q96RU2 OSBPL9P5-201ENST00000542581 171 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.66□□□□□ -1.82
USP28Q96RU2 AC010198.2-201ENST00000550612 259 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 HIGD1AP1-201ENST00000550979 275 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AC037471.2-201ENST00000564941 598 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AC005412.1-201ENST00000580812 1049 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 BNIP3P24-201ENST00000593398 557 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AC006254.3-201ENST00000603353 884 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AL109618.2-201ENST00000605527 211 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AC006023.2-201ENST00000609916 167 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AL139418.1-201ENST00000613613 177 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AL157817.1-201ENST00000614264 790 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AC131159.1-201ENST00000621854 213 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AC079416.3-201ENST00000624479 549 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 MIR1322-201ENST00000638013 71 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 AC104454.1-201ENST00000421341 1401 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.66□□□□□ -1.82
USP28Q96RU2 AC012321.1-201ENST00000561622 1588 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP28Q96RU2 Z83843.1-201ENST00000604070 3685 ntBASIC3.66□□□□□ -1.82
USP28Q96RU2 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP28Q96RU2 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP28Q96RU2 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.65□□□□□ -1.82
USP28Q96RU2 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
USP28Q96RU2 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
USP28Q96RU2 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.82
USP28Q96RU2 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
USP28Q96RU2 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
USP28Q96RU2 HMGB1P5-201ENST00000255320 642 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP28Q96RU2 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
USP28Q96RU2 RNU6-582P-201ENST00000362989 107 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 RNU1-33P-201ENST00000364249 162 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 RNU6-157P-201ENST00000383957 107 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 RNU6-1151P-201ENST00000384684 107 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms