Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MIMT1-201ENST00000597105 1050 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 AC092474.3-201ENST00000603022 568 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC42Q96M95 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC42Q96M95 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC42Q96M95 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
CCDC42Q96M95 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.71□□□□□ -1.98
CCDC42Q96M95 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC42Q96M95 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC2.71□□□□□ -1.98
CCDC42Q96M95 ZNF271P-202ENST00000465539 1970 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 AC091564.4-201ENST00000533934 2194 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC42Q96M95 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC42Q96M95 RNVU1-3-201ENST00000364313 161 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 SNORA9-201ENST00000384215 133 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 AL360182.1-201ENST00000397433 468 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC42Q96M95 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC42Q96M95 SUMO1P4-201ENST00000429430 302 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC42Q96M95 YWHAZP8-201ENST00000436935 731 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC42Q96M95 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC42Q96M95 AC008565.1-201ENST00000509046 885 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 AC096725.1-201ENST00000514266 313 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 AC113192.3-201ENST00000529152 742 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC42Q96M95 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC42Q96M95 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC42Q96M95 COX6CP3-201ENST00000580869 223 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 MIR5195-201ENST00000583555 115 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC42Q96M95 CYP3A51P-201ENST00000633513 256 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 CRYM-AS1-204ENST00000637983 556 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.7□□□□□ -1.98
CCDC42Q96M95 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC42Q96M95 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC42Q96M95 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC42Q96M95 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC42Q96M95 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC42Q96M95 RNU6-263P-201ENST00000363811 107 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 RNA5SP456-201ENST00000364002 114 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 RNU6-374P-201ENST00000364146 108 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 RNA5SP38-201ENST00000410750 119 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 RPL21P32-201ENST00000419877 477 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 FO393419.3-201ENST00000428741 282 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AC098826.1-201ENST00000433943 471 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 LSM1P1-201ENST00000438629 273 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 AL109741.2-201ENST00000455561 343 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AC073901.1-201ENST00000462471 408 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AC093663.2-201ENST00000484625 313 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 BLNK-209ENST00000495266 440 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 RNF138P1-201ENST00000502765 546 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 ERHP1-201ENST00000523006 310 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 MIR3944-201ENST00000581277 108 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AC024220.1-201ENST00000603675 484 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AC007179.3-201ENST00000604976 235 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AC239803.2-201ENST00000610161 430 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AC096577.2-201ENST00000611455 153 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AC092650.2-201ENST00000619984 902 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 AC138915.1-201ENST00000565427 1685 ntBASIC2.69□□□□□ -1.98
CCDC42Q96M95 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC42Q96M95 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 RNU6-799P-201ENST00000363567 107 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 RNU6-1027P-201ENST00000383998 107 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 DSTNP4-201ENST00000399472 474 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 HSFY1P1-201ENST00000423928 1178 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 CAB39P1-201ENST00000502277 460 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 AC009901.1-201ENST00000506703 541 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 HMGB1P47-201ENST00000511281 589 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 AP003385.6-201ENST00000531603 374 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 AL442163.2-201ENST00000553912 710 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 AL669831.4-202ENST00000590817 238 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 AC135178.6-201ENST00000605314 398 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 AC104237.2-201ENST00000612456 443 ntBASIC2.68□□□□□ -1.98
CCDC42Q96M95 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC42Q96M95 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC42Q96M95 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 164.5 ms