Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 RNU6-5P-201ENST00000384238 107 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 RNU6-3P-201ENST00000384314 107 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 RNU6-2-201ENST00000384627 107 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 RNU6-9-201ENST00000384776 107 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 RNU6-33P-201ENST00000384793 107 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC1.52□□□□□ -2.17
COL7A1Q02388 OR52A4P-203ENST00000498233 1014 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 MIR4452-201ENST00000583004 71 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 RNU6-6P-201ENST00000606623 107 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 AC092650.2-201ENST00000619984 902 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL7A1Q02388 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
COL7A1Q02388 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
COL7A1Q02388 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
COL7A1Q02388 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL7A1Q02388 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC1.52□□□□□ -2.17
COL7A1Q02388 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC1.52□□□□□ -2.17
COL7A1Q02388 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC1.52□□□□□ -2.17
COL7A1Q02388 SNRPFP4-201ENST00000456366 242 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.52□□□□□ -2.17
COL7A1Q02388 RNU7-170P-201ENST00000459303 61 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 POU5F1P7-201ENST00000508759 541 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 AC117532.1-201ENST00000514638 323 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC1.52□□□□□ -2.17
COL7A1Q02388 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.52□□□□□ -2.17
COL7A1Q02388 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC1.52□□□□□ -2.17
COL7A1Q02388 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC1.52□□□□□ -2.17
COL7A1Q02388 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC1.52□□□□□ -2.17
COL7A1Q02388 AL451074.6-201ENST00000608512 729 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 Z99129.2-201ENST00000619967 314 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 AC093591.3-201ENST00000634516 308 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 MIR3199-2-201ENST00000636243 86 ntBASIC1.52□□□□□ -2.17
COL7A1Q02388 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC1.51□□□□□ -2.17
COL7A1Q02388 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC1.51□□□□□ -2.17
COL7A1Q02388 RPS24P8-201ENST00000431490 402 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC1.51□□□□□ -2.17
COL7A1Q02388 AC233279.1-201ENST00000455300 423 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 SNORD13-201ENST00000459299 104 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC1.51□□□□□ -2.17
COL7A1Q02388 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC1.51□□□□□ -2.17
COL7A1Q02388 AL354943.1-201ENST00000572103 781 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC1.51□□□□□ -2.17
COL7A1Q02388 VN1R80P-201ENST00000597126 338 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 AC245517.5-201ENST00000611529 162 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 AC091834.1-201ENST00000614543 472 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC1.51□□□□□ -2.17
COL7A1Q02388 EXOC5P1-201ENST00000510543 1969 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 Y_RNA.205-201ENST00000364128 113 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 RNU6-342P-201ENST00000384521 104 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC1.51□□□□□ -2.17
COL7A1Q02388 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC1.51□□□□□ -2.17
COL7A1Q02388 AC092798.1-201ENST00000458542 409 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC1.51□□□□□ -2.17
COL7A1Q02388 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC1.51□□□□□ -2.17
COL7A1Q02388 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.51□□□□□ -2.17
COL7A1Q02388 LTV1P1-201ENST00000510683 1237 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
COL7A1Q02388 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
COL7A1Q02388 RNA5SP182-201ENST00000516064 82 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 OR4A45P-201ENST00000529954 901 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.51□□□□□ -2.17
COL7A1Q02388 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.51□□□□□ -2.17
COL7A1Q02388 AC010546.1-201ENST00000569391 485 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 AC012182.1-201ENST00000570133 895 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC1.51□□□□□ -2.17
COL7A1Q02388 LRRC37A5P-203ENST00000580181 585 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC1.51□□□□□ -2.17
COL7A1Q02388 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 AC091953.2-201ENST00000623979 160 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 OR1S1-201ENST00000624470 978 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC1.51□□□□□ -2.17
COL7A1Q02388 AP005901.5-201ENST00000545779 1796 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 AC011978.2-201ENST00000569835 2054 ntBASIC1.51□□□□□ -2.17
COL7A1Q02388 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC1.51□□□□□ -2.17
COL7A1Q02388 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC1.5□□□□□ -2.17
COL7A1Q02388 U8.10-201ENST00000384260 133 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 RPS7P9-201ENST00000414704 586 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AC073136.2-201ENST00000417282 849 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC1.5□□□□□ -2.17
COL7A1Q02388 AC009969.1-201ENST00000438726 172 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AL121594.1-201ENST00000475906 575 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AC092991.1-201ENST00000477176 376 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 MLLT10P2-201ENST00000506434 249 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC1.5□□□□□ -2.17
COL7A1Q02388 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC1.5□□□□□ -2.17
COL7A1Q02388 IGLV3-17-201ENST00000519099 244 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.5□□□□□ -2.17
COL7A1Q02388 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC1.5□□□□□ -2.17
COL7A1Q02388 AC110588.1-201ENST00000559699 137 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 MIR4285-201ENST00000581001 85 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 SNRPGP19-201ENST00000603826 189 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AC087468.1-201ENST00000604365 630 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 BX248123.2-201ENST00000606318 124 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC1.5□□□□□ -2.17
COL7A1Q02388 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
COL7A1Q02388 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
COL7A1Q02388 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC1.5□□□□□ -2.17
COL7A1Q02388 RNA5SP129-201ENST00000410276 118 ntBASIC1.5□□□□□ -2.17
COL7A1Q02388 RPS15AP12-201ENST00000419498 388 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 157.4 ms