Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.53□□□□□ -1.68
MSX2P35548 AC006548.1-201ENST00000427470 102 ntBASIC4.53□□□□□ -1.68
MSX2P35548 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.53□□□□□ -1.68
MSX2P35548 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.53□□□□□ -1.68
MSX2P35548 AC119618.1-201ENST00000434191 222 ntBASIC4.53□□□□□ -1.68
MSX2P35548 AC005297.2-201ENST00000450430 606 ntBASIC4.53□□□□□ -1.68
MSX2P35548 AP1S2P1-201ENST00000457344 379 ntBASIC4.53□□□□□ -1.68
MSX2P35548 MTCO2P29-201ENST00000465212 189 ntBASIC4.53□□□□□ -1.68
MSX2P35548 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.53□□□□□ -1.68
MSX2P35548 EIF4EP3-201ENST00000498782 656 ntBASIC4.53□□□□□ -1.68
MSX2P35548 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.53□□□□□ -1.68
MSX2P35548 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.53□□□□□ -1.68
MSX2P35548 RN7SKP13-201ENST00000515933 244 ntBASIC4.53□□□□□ -1.68
MSX2P35548 RNA5SP43-201ENST00000516559 110 ntBASIC4.53□□□□□ -1.68
MSX2P35548 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.53□□□□□ -1.68
MSX2P35548 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.53□□□□□ -1.68
MSX2P35548 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.53□□□□□ -1.68
MSX2P35548 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.53□□□□□ -1.68
MSX2P35548 AC012182.1-201ENST00000570133 895 ntBASIC4.53□□□□□ -1.68
MSX2P35548 OR7E18P-201ENST00000592589 702 ntBASIC4.53□□□□□ -1.68
MSX2P35548 AC105429.2-201ENST00000610567 517 ntBASIC4.53□□□□□ -1.68
MSX2P35548 CR381572.1-201ENST00000625098 102 ntBASIC4.53□□□□□ -1.68
MSX2P35548 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
MSX2P35548 MTND5P33-201ENST00000571250 1450 ntBASIC4.53□□□□□ -1.68
MSX2P35548 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSX2P35548 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.53□□□□□ -1.68
MSX2P35548 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.53□□□□□ -1.68
MSX2P35548 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.53□□□□□ -1.68
MSX2P35548 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSX2P35548 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
MSX2P35548 MTND4P35-201ENST00000604257 1375 ntBASIC4.53□□□□□ -1.69
MSX2P35548 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSX2P35548 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
MSX2P35548 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.52□□□□□ -1.69
MSX2P35548 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.52□□□□□ -1.69
MSX2P35548 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.52□□□□□ -1.69
MSX2P35548 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSX2P35548 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
MSX2P35548 NACAP2-201ENST00000318548 624 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AL161781.1-201ENST00000354277 403 ntBASIC4.52□□□□□ -1.69
MSX2P35548 SNORA74A-201ENST00000364089 198 ntBASIC4.52□□□□□ -1.69
MSX2P35548 RNY4P16-201ENST00000364768 94 ntBASIC4.52□□□□□ -1.69
MSX2P35548 RNU6-510P-201ENST00000391239 108 ntBASIC4.52□□□□□ -1.69
MSX2P35548 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSX2P35548 AL591416.1-201ENST00000404015 867 ntBASIC4.52□□□□□ -1.69
MSX2P35548 RN7SKP140-201ENST00000411196 284 ntBASIC4.52□□□□□ -1.69
MSX2P35548 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.52□□□□□ -1.69
MSX2P35548 ATP5JP1-201ENST00000431631 322 ntBASIC4.52□□□□□ -1.69
MSX2P35548 IFNA20P-201ENST00000436840 528 ntBASIC4.52□□□□□ -1.69
MSX2P35548 HSPE1P28-201ENST00000443139 211 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AL163193.1-201ENST00000444895 788 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AC104651.2-201ENST00000447549 528 ntBASIC4.52□□□□□ -1.69
MSX2P35548 RNU7-63P-201ENST00000459054 62 ntBASIC4.52□□□□□ -1.69
MSX2P35548 Y_RNA.632-201ENST00000459189 102 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AC022795.1-201ENST00000473808 480 ntBASIC4.52□□□□□ -1.69
MSX2P35548 RPS4XP1-201ENST00000482189 787 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.52□□□□□ -1.69
MSX2P35548 RN7SL466P-201ENST00000497546 295 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.52□□□□□ -1.69
MSX2P35548 PGAM1P13-201ENST00000507497 754 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.52□□□□□ -1.69
MSX2P35548 TXNP6-201ENST00000510190 310 ntBASIC4.52□□□□□ -1.69
MSX2P35548 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.52□□□□□ -1.69
MSX2P35548 AC093677.1-201ENST00000514414 678 ntBASIC4.52□□□□□ -1.69
MSX2P35548 Y_RNA.691-201ENST00000516611 103 ntBASIC4.52□□□□□ -1.69
MSX2P35548 RN7SKP82-201ENST00000516786 223 ntBASIC4.52□□□□□ -1.69
MSX2P35548 RNA5SP337-201ENST00000517007 109 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.52□□□□□ -1.69
MSX2P35548 BTF3P12-201ENST00000519620 469 ntBASIC4.52□□□□□ -1.69
MSX2P35548 IGLV3-26-201ENST00000520756 302 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.52□□□□□ -1.69
MSX2P35548 OR4T1P-201ENST00000554933 911 ntBASIC4.52□□□□□ -1.69
MSX2P35548 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.52□□□□□ -1.69
MSX2P35548 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.52□□□□□ -1.69
MSX2P35548 BNIP3P22-201ENST00000593399 556 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AL354950.2-201ENST00000617939 290 ntBASIC4.52□□□□□ -1.69
MSX2P35548 AC068831.8-201ENST00000620171 435 ntBASIC4.52□□□□□ -1.69
MSX2P35548 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.52□□□□□ -1.69
MSX2P35548 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.52□□□□□ -1.69
MSX2P35548 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSX2P35548 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSX2P35548 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.52□□□□□ -1.69
MSX2P35548 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSX2P35548 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.51□□□□□ -1.69
MSX2P35548 MTND5P3-201ENST00000438536 1800 ntBASIC4.51□□□□□ -1.69
MSX2P35548 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSX2P35548 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.51□□□□□ -1.69
MSX2P35548 OR4G1P-203ENST00000641984 1631 ntBASIC4.51□□□□□ -1.69
MSX2P35548 AC105074.1-201ENST00000623380 3095 ntBASIC4.51□□□□□ -1.69
MSX2P35548 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSX2P35548 ZBTB8OSP1-201ENST00000342688 498 ntBASIC4.51□□□□□ -1.69
MSX2P35548 Y_RNA.255-201ENST00000364581 97 ntBASIC4.51□□□□□ -1.69
MSX2P35548 RNU6-738P-201ENST00000384531 106 ntBASIC4.51□□□□□ -1.69
MSX2P35548 MIR105-2-201ENST00000385083 81 ntBASIC4.51□□□□□ -1.69
MSX2P35548 RPL7P60-201ENST00000397636 735 ntBASIC4.51□□□□□ -1.69
MSX2P35548 TXNP7-201ENST00000406296 293 ntBASIC4.51□□□□□ -1.69
MSX2P35548 DUTP5-201ENST00000406790 469 ntBASIC4.51□□□□□ -1.69
MSX2P35548 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.51□□□□□ -1.69
MSX2P35548 RN7SKP167-201ENST00000411047 285 ntBASIC4.51□□□□□ -1.69
MSX2P35548 RPS7P15-201ENST00000415804 584 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms