Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 MIR4513-201ENST00000581077 86 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC9P31274 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXC9P31274 IGHV3-29-201ENST00000604817 344 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC9P31274 MIR7106-201ENST00000612419 65 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 AC005332.6-201ENST00000613178 446 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC9P31274 AP003485.2-201ENST00000623636 610 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 AC007490.1-201ENST00000624321 703 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 MIR1322-201ENST00000638013 71 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 MKKS-204ENST00000639674 192 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXC9P31274 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC9P31274 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC9P31274 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
HOXC9P31274 FAM35DP-201ENST00000323387 2712 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 AC104454.1-201ENST00000421341 1401 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HOXC9P31274 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXC9P31274 NF1-214ENST00000490416 1329 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 AC107982.1-201ENST00000507171 1300 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXC9P31274 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC9P31274 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
HOXC9P31274 AL121978.1-201ENST00000402778 359 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 RPL30P3-201ENST00000424262 333 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 USP9YP11-201ENST00000427537 717 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 AL139132.1-201ENST00000431587 344 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 AC005345.1-201ENST00000431868 217 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 MTND1P32-201ENST00000433043 938 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXC9P31274 RPS29P26-201ENST00000477483 171 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 S100A11P1-201ENST00000477525 312 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 OR4G11P-201ENST00000492842 939 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC9P31274 AC090071.1-201ENST00000507713 644 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC9P31274 AC079395.1-201ENST00000510981 262 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 AC010587.2-201ENST00000511727 448 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC9P31274 MTCO1P30-201ENST00000515244 580 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 RN7SKP31-201ENST00000516354 278 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC9P31274 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC9P31274 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC9P31274 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXC9P31274 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXC9P31274 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXC9P31274 DUXAP1-201ENST00000556632 463 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXC9P31274 AC074051.3-201ENST00000570238 358 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC9P31274 MIR4672-201ENST00000583126 81 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC9P31274 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC9P31274 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC9P31274 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC9P31274 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC9P31274 AC098679.5-201ENST00000624394 571 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 AC079416.3-201ENST00000624479 549 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 MIR4278-201ENST00000636094 69 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 AP000776.1-201ENST00000530032 1663 ntBASIC4.18□□□□□ -1.74
HOXC9P31274 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXC9P31274 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXC9P31274 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXC9P31274 MTND5P31-201ENST00000419366 1374 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC9P31274 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC9P31274 MIR30E-201ENST00000362104 92 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 SNORD113-6-201ENST00000363345 75 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC9P31274 RNU6-157P-201ENST00000383957 107 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC4.17□□□□□ -1.74
HOXC9P31274 AL031121.1-201ENST00000406553 254 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
HOXC9P31274 LUZP4P1-201ENST00000415420 344 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXC9P31274 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC9P31274 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC9P31274 USP9YP36-201ENST00000424581 829 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXC9P31274 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXC9P31274 MTND5P25-201ENST00000430499 799 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXC9P31274 AL008629.1-201ENST00000438615 184 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC9P31274 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC9P31274 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXC9P31274 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC9P31274 ERP27-202ENST00000540097 993 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXC9P31274 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXC9P31274 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXC9P31274 MRPS36P5-201ENST00000551909 298 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC9P31274 AC027807.1-201ENST00000559921 996 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms