Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 Y_RNA.193-201ENST00000363979 102 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 RNA5SP267-201ENST00000364893 126 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 Y_RNA.302-201ENST00000364997 102 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 SNORA33.2-201ENST00000365413 134 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 Y_RNA.452-201ENST00000384202 108 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 CALM2P3-201ENST00000400429 449 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 SNORA74C-2-201ENST00000411179 201 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AC113618.1-201ENST00000416747 285 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AC140076.1-201ENST00000449897 361 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AC093278.1-201ENST00000494700 600 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 RN7SL323P-201ENST00000494712 295 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 RNU6-789P-201ENST00000517105 102 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 SNORD39.2-201ENST00000579995 76 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 SEPT7P9-203ENST00000604116 343 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AC140113.4-201ENST00000622087 222 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 U6.107-201ENST00000637108 79 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AC116667.1-201ENST00000604855 2072 ntBASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL17A1Q9UMD9 AL035425.3-201ENST00000564206 4996 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 SNORD81.2-201ENST00000365153 76 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 RNU1-63P-201ENST00000383902 164 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 MTCO2P33-201ENST00000402100 465 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AL356432.1-201ENST00000405809 419 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 MIR1271-201ENST00000408537 86 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 CBX1P3-201ENST00000413296 527 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AMMECR1LP1-201ENST00000415152 841 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 MTCO1P20-201ENST00000425366 358 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 HMGB1P45-201ENST00000435986 653 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 DNAJC19P8-201ENST00000452887 259 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 UBTFL6-201ENST00000477929 1024 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 LARP1BP2-201ENST00000486594 519 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AC019235.1-201ENST00000503847 207 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AC091133.4-201ENST00000511142 308 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 SCARNA14-201ENST00000516903 136 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 RAD21-204ENST00000518055 896 ntTSL 2 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 IGJP1-201ENST00000522682 475 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 CBX3P5-201ENST00000552017 521 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AL157687.1-201ENST00000554853 619 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AC009852.2-201ENST00000567898 485 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AL035413.2-201ENST00000604801 525 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AL133215.3-201ENST00000609801 448 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 AL138820.1-201ENST00000617901 5305 ntBASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC6.3□□□□□ -1.4
COL17A1Q9UMD9 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 SNORD56.2-201ENST00000363242 71 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 Y_RNA.202-201ENST00000364083 110 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 RNU6-877P-201ENST00000383868 107 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 MT-TG-201ENST00000387429 68 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 MIR1302-3-201ENST00000408128 138 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 MIR548I3-201ENST00000408378 149 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 MIR548I1-201ENST00000408810 149 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 RPS3AP9-201ENST00000417027 792 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AC009161.1-201ENST00000417306 376 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 GAPDHP17-201ENST00000449858 1001 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 RNU6-1208P-201ENST00000459588 107 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 RPS4XP10-201ENST00000465034 731 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AF131216.2-201ENST00000512316 564 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 BNIP3P10-201ENST00000605360 577 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 AC138965.3-201ENST00000623875 498 ntBASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL17A1Q9UMD9 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms