Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 MTATP6P24-201ENST00000576835 677 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC061975.8-201ENST00000587058 721 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC015967.1-201ENST00000619893 476 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC011330.2-201ENST00000621680 635 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC068647.1-201ENST00000489539 2265 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CPSF3Q9UKF6 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 CEP170P1-201ENST00000502249 4587 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AP000776.1-201ENST00000530032 1663 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 RNU4-35P-201ENST00000362588 141 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 RNU6-989P-201ENST00000362756 107 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 RNVU1-3-201ENST00000364313 161 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 SNORD82-201ENST00000365530 70 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 MIR490-201ENST00000384865 128 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 MTND4LP20-201ENST00000402379 270 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 XKRYP1-201ENST00000423438 492 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 RPL21P66-201ENST00000426566 466 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 XKRYP2-201ENST00000432915 492 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC092427.1-201ENST00000439177 601 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 RPL39P6-201ENST00000448289 150 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 RPL18AP17-201ENST00000455326 198 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 HMGN2P16-201ENST00000456802 261 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 RPL23AP62-201ENST00000463396 453 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC025518.1-201ENST00000479856 347 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AL024509.2-201ENST00000493462 493 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 MTCYBP17-201ENST00000503579 789 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 SLC25A15P5-201ENST00000508033 253 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC109445.1-201ENST00000512356 383 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 DUXAP2-201ENST00000519198 589 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC010198.2-201ENST00000550612 259 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 DUXAP6-201ENST00000553858 601 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC079395.3-201ENST00000615161 484 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 AC073968.1-201ENST00000618594 637 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 U6.105-201ENST00000637379 88 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 U6.101-201ENST00000637707 76 ntBASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CPSF3Q9UKF6 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 Y_RNA.311-201ENST00000365068 96 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 RNA5SP235-201ENST00000365411 114 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AP000567.1-201ENST00000406413 156 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 RN7SKP111-201ENST00000410349 271 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AL008987.1-201ENST00000415528 237 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 RPS24P7-201ENST00000416921 246 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AL139421.1-201ENST00000423010 169 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 YME1L1P1-201ENST00000429435 297 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AL159987.2-201ENST00000432754 307 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 MTCO3P16-201ENST00000454456 754 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 AL136097.1-201ENST00000456945 913 ntBASIC3.78□□□□□ -1.8
CPSF3Q9UKF6 MTND1P16-201ENST00000465177 898 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 172.7 ms