Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.97□□□□□ -1.61
RNF4P78317 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
RNF4P78317 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
RNF4P78317 API5P2-201ENST00000397055 1498 ntBASIC4.97□□□□□ -1.61
RNF4P78317 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
RNF4P78317 Y_RNA.493-201ENST00000384422 102 ntBASIC4.97□□□□□ -1.61
RNF4P78317 SNORA67-201ENST00000384423 137 ntBASIC4.97□□□□□ -1.61
RNF4P78317 MT-TC-201ENST00000387405 66 ntBASIC4.97□□□□□ -1.61
RNF4P78317 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
RNF4P78317 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.97□□□□□ -1.61
RNF4P78317 RN7SKP158-201ENST00000410453 326 ntBASIC4.97□□□□□ -1.61
RNF4P78317 CYCSP10-201ENST00000417973 294 ntBASIC4.97□□□□□ -1.61
RNF4P78317 RPL7P46-201ENST00000425129 740 ntBASIC4.97□□□□□ -1.61
RNF4P78317 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.97□□□□□ -1.61
RNF4P78317 AC005008.1-201ENST00000456151 612 ntBASIC4.97□□□□□ -1.61
RNF4P78317 RNU7-152P-201ENST00000458982 64 ntBASIC4.97□□□□□ -1.61
RNF4P78317 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.97□□□□□ -1.61
RNF4P78317 RPL35AP28-201ENST00000459730 331 ntBASIC4.97□□□□□ -1.61
RNF4P78317 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.97□□□□□ -1.61
RNF4P78317 ST13P14-201ENST00000474095 734 ntBASIC4.97□□□□□ -1.61
RNF4P78317 RN7SL30P-201ENST00000488416 306 ntBASIC4.97□□□□□ -1.61
RNF4P78317 RPL39P5-202ENST00000512505 151 ntBASIC4.97□□□□□ -1.61
RNF4P78317 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.97□□□□□ -1.61
RNF4P78317 RNU6-941P-201ENST00000516346 108 ntBASIC4.97□□□□□ -1.61
RNF4P78317 RNU6-566P-201ENST00000516790 107 ntBASIC4.97□□□□□ -1.61
RNF4P78317 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.97□□□□□ -1.61
RNF4P78317 AC090136.1-201ENST00000520009 240 ntBASIC4.97□□□□□ -1.61
RNF4P78317 COPS8P3-201ENST00000526024 482 ntBASIC4.97□□□□□ -1.61
RNF4P78317 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.97□□□□□ -1.61
RNF4P78317 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.97□□□□□ -1.61
RNF4P78317 AL390726.5-202ENST00000564800 256 ntBASIC4.97□□□□□ -1.61
RNF4P78317 RPL10P14-201ENST00000565265 298 ntBASIC4.97□□□□□ -1.61
RNF4P78317 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.97□□□□□ -1.61
RNF4P78317 uc_338.11-201ENST00000619132 160 ntBASIC4.97□□□□□ -1.61
RNF4P78317 AC135068.12-201ENST00000637370 931 ntBASIC4.97□□□□□ -1.61
RNF4P78317 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC4.97□□□□□ -1.61
RNF4P78317 AC000123.3-201ENST00000624029 4975 ntBASIC4.97□□□□□ -1.61
RNF4P78317 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
RNF4P78317 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
RNF4P78317 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
RNF4P78317 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.97□□□□□ -1.61
RNF4P78317 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
RNF4P78317 ABCC13-202ENST00000463099 3842 ntBASIC4.97□□□□□ -1.61
RNF4P78317 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.97□□□□□ -1.61
RNF4P78317 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
RNF4P78317 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.61
RNF4P78317 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.96□□□□□ -1.61
RNF4P78317 OR55B1P-203ENST00000641518 2602 ntBASIC4.96□□□□□ -1.61
RNF4P78317 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
RNF4P78317 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.96□□□□□ -1.61
RNF4P78317 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
RNF4P78317 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
RNF4P78317 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
RNF4P78317 PABPC1P6-201ENST00000445594 1829 ntBASIC4.96□□□□□ -1.62
RNF4P78317 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
RNF4P78317 SNORD113-7-201ENST00000363762 77 ntBASIC4.96□□□□□ -1.62
RNF4P78317 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
RNF4P78317 RNU6-637P-201ENST00000384050 107 ntBASIC4.96□□□□□ -1.62
RNF4P78317 RNU6-146P-201ENST00000384602 108 ntBASIC4.96□□□□□ -1.62
RNF4P78317 RNU6-550P-201ENST00000391057 101 ntBASIC4.96□□□□□ -1.62
RNF4P78317 SNORA68.2-201ENST00000391263 128 ntBASIC4.96□□□□□ -1.62
RNF4P78317 SOD2P1-201ENST00000396543 562 ntBASIC4.96□□□□□ -1.62
RNF4P78317 POLHP1-201ENST00000411806 470 ntBASIC4.96□□□□□ -1.62
RNF4P78317 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 GJA6P-201ENST00000415117 1042 ntBASIC4.96□□□□□ -1.62
RNF4P78317 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.96□□□□□ -1.62
RNF4P78317 UBE2FP1-201ENST00000416536 447 ntBASIC4.96□□□□□ -1.62
RNF4P78317 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 BX510359.3-201ENST00000422168 306 ntBASIC4.96□□□□□ -1.62
RNF4P78317 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 BX276092.6-201ENST00000430476 250 ntBASIC4.96□□□□□ -1.62
RNF4P78317 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.96□□□□□ -1.62
RNF4P78317 RPL36AP6-201ENST00000435770 321 ntBASIC4.96□□□□□ -1.62
RNF4P78317 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 RPL35AP22-201ENST00000436855 335 ntBASIC4.96□□□□□ -1.62
RNF4P78317 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 RPL32P28-201ENST00000443577 397 ntBASIC4.96□□□□□ -1.62
RNF4P78317 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
RNF4P78317 BX276092.8-201ENST00000455722 250 ntBASIC4.96□□□□□ -1.62
RNF4P78317 SNORD97-201ENST00000459187 142 ntBASIC4.96□□□□□ -1.62
RNF4P78317 RPL37P6-202ENST00000464216 403 ntBASIC4.96□□□□□ -1.62
RNF4P78317 AC006967.1-201ENST00000467608 589 ntBASIC4.96□□□□□ -1.62
RNF4P78317 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
RNF4P78317 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 AC006499.3-201ENST00000506077 748 ntBASIC4.96□□□□□ -1.62
RNF4P78317 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 HIGD1AP3-201ENST00000515857 278 ntBASIC4.96□□□□□ -1.62
RNF4P78317 RNU6-256P-201ENST00000516747 97 ntBASIC4.96□□□□□ -1.62
RNF4P78317 RNA5SP34-201ENST00000516887 130 ntBASIC4.96□□□□□ -1.62
RNF4P78317 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
RNF4P78317 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.96□□□□□ -1.62
RNF4P78317 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.96□□□□□ -1.62
RNF4P78317 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.96□□□□□ -1.62
RNF4P78317 MIR4660-201ENST00000583549 74 ntBASIC4.96□□□□□ -1.62
RNF4P78317 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.96□□□□□ -1.62
RNF4P78317 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms