Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.76□□□□□ -1.97
USF1P22415 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.76□□□□□ -1.97
USF1P22415 XACT-201ENST00000468762 497 ntTSL 5 BASIC2.76□□□□□ -1.97
USF1P22415 AC108078.3-201ENST00000502633 489 ntBASIC2.76□□□□□ -1.97
USF1P22415 MTCO2P9-201ENST00000503214 694 ntBASIC2.76□□□□□ -1.97
USF1P22415 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.76□□□□□ -1.97
USF1P22415 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USF1P22415 AC019227.1-201ENST00000526902 510 ntBASIC2.76□□□□□ -1.97
USF1P22415 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.76□□□□□ -1.97
USF1P22415 MIR4513-201ENST00000581077 86 ntBASIC2.76□□□□□ -1.97
USF1P22415 AC008507.1-201ENST00000587506 734 ntBASIC2.76□□□□□ -1.97
USF1P22415 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.76□□□□□ -1.97
USF1P22415 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.76□□□□□ -1.97
USF1P22415 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC2.76□□□□□ -1.97
USF1P22415 AL157817.1-201ENST00000614264 790 ntBASIC2.76□□□□□ -1.97
USF1P22415 AL110115.1-201ENST00000614396 364 ntBASIC2.76□□□□□ -1.97
USF1P22415 AC009464.1-201ENST00000615731 469 ntBASIC2.76□□□□□ -1.97
USF1P22415 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.76□□□□□ -1.97
USF1P22415 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC2.76□□□□□ -1.97
USF1P22415 BX649567.1-201ENST00000642071 1134 ntBASIC2.76□□□□□ -1.97
USF1P22415 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.76□□□□□ -1.97
USF1P22415 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
USF1P22415 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USF1P22415 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.76□□□□□ -1.97
USF1P22415 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.76□□□□□ -1.97
USF1P22415 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USF1P22415 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USF1P22415 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
USF1P22415 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
USF1P22415 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
USF1P22415 OR5BR1P-201ENST00000524992 1330 ntBASIC2.75□□□□□ -1.97
USF1P22415 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
USF1P22415 AC110774.1-201ENST00000623567 2018 ntBASIC2.75□□□□□ -1.97
USF1P22415 CR383658.2-201ENST00000547576 1525 ntBASIC2.75□□□□□ -1.97
USF1P22415 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
USF1P22415 RNU6-251P-201ENST00000363235 104 ntBASIC2.75□□□□□ -1.97
USF1P22415 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.75□□□□□ -1.97
USF1P22415 RNU6-354P-201ENST00000383862 107 ntBASIC2.75□□□□□ -1.97
USF1P22415 RNU6-610P-201ENST00000384264 107 ntBASIC2.75□□□□□ -1.97
USF1P22415 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
USF1P22415 AL591034.1-201ENST00000407447 340 ntBASIC2.75□□□□□ -1.97
USF1P22415 RNU6-712P-201ENST00000410558 100 ntBASIC2.75□□□□□ -1.97
USF1P22415 AC063979.1-201ENST00000415539 377 ntBASIC2.75□□□□□ -1.97
USF1P22415 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USF1P22415 AL356968.1-201ENST00000416622 474 ntBASIC2.75□□□□□ -1.97
USF1P22415 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.75□□□□□ -1.97
USF1P22415 DUTP6-201ENST00000425573 462 ntBASIC2.75□□□□□ -1.97
USF1P22415 UBE2D3P3-201ENST00000426992 425 ntBASIC2.75□□□□□ -1.97
USF1P22415 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC2.75□□□□□ -1.97
USF1P22415 AC005345.1-201ENST00000431868 217 ntBASIC2.75□□□□□ -1.97
USF1P22415 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC2.75□□□□□ -1.97
USF1P22415 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC2.75□□□□□ -1.97
USF1P22415 HSPE1P28-201ENST00000443139 211 ntBASIC2.75□□□□□ -1.97
USF1P22415 AL592437.1-201ENST00000443781 492 ntBASIC2.75□□□□□ -1.97
USF1P22415 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.75□□□□□ -1.97
USF1P22415 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC2.75□□□□□ -1.97
USF1P22415 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.75□□□□□ -1.97
USF1P22415 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.75□□□□□ -1.97
USF1P22415 AC105914.1-201ENST00000511798 226 ntBASIC2.75□□□□□ -1.97
USF1P22415 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.75□□□□□ -1.97
USF1P22415 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC2.75□□□□□ -1.97
USF1P22415 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USF1P22415 AC006518.2-201ENST00000542513 940 ntBASIC2.75□□□□□ -1.97
USF1P22415 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC2.75□□□□□ -1.97
USF1P22415 AC034268.2-201ENST00000571784 482 ntBASIC2.75□□□□□ -1.97
USF1P22415 AC006504.3-201ENST00000586818 523 ntBASIC2.75□□□□□ -1.97
USF1P22415 AP001029.3-201ENST00000588063 596 ntBASIC2.75□□□□□ -1.97
USF1P22415 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC2.75□□□□□ -1.97
USF1P22415 AL137843.1-201ENST00000605078 385 ntBASIC2.75□□□□□ -1.97
USF1P22415 AC124312.4-201ENST00000605533 310 ntBASIC2.75□□□□□ -1.97
USF1P22415 AC009318.4-201ENST00000620496 486 ntBASIC2.75□□□□□ -1.97
USF1P22415 AL360181.4-201ENST00000621752 134 ntBASIC2.75□□□□□ -1.97
USF1P22415 AC026422.1-201ENST00000623961 452 ntBASIC2.75□□□□□ -1.97
USF1P22415 AC006386.2-201ENST00000624491 75 ntBASIC2.75□□□□□ -1.97
USF1P22415 AC012005.1-201ENST00000624575 75 ntBASIC2.75□□□□□ -1.97
USF1P22415 ZNF663P-202ENST00000641770 1131 ntBASIC2.75□□□□□ -1.97
USF1P22415 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.75□□□□□ -1.97
USF1P22415 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
USF1P22415 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
USF1P22415 ZNF807-201ENST00000328088 1707 ntBASIC2.74□□□□□ -1.97
USF1P22415 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
USF1P22415 RNU6-582P-201ENST00000362989 107 ntBASIC2.74□□□□□ -1.97
USF1P22415 RNU6-7-201ENST00000364784 107 ntBASIC2.74□□□□□ -1.97
USF1P22415 RNU1-140P-201ENST00000365040 165 ntBASIC2.74□□□□□ -1.97
USF1P22415 RNU6-8-201ENST00000365467 107 ntBASIC2.74□□□□□ -1.97
USF1P22415 SNORD82-201ENST00000365530 70 ntBASIC2.74□□□□□ -1.97
USF1P22415 CRP-202ENST00000368110 667 ntTSL 3 BASIC2.74□□□□□ -1.97
USF1P22415 Y_RNA.500-201ENST00000384466 111 ntBASIC2.74□□□□□ -1.97
USF1P22415 SAR1AP2-201ENST00000392696 594 ntBASIC2.74□□□□□ -1.97
USF1P22415 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.74□□□□□ -1.97
USF1P22415 RNA5SP293-201ENST00000410527 113 ntBASIC2.74□□□□□ -1.97
USF1P22415 RNA5SP31-201ENST00000411144 127 ntBASIC2.74□□□□□ -1.97
USF1P22415 AC007899.1-201ENST00000412776 775 ntBASIC2.74□□□□□ -1.97
USF1P22415 HMGB3P23-201ENST00000414981 585 ntBASIC2.74□□□□□ -1.97
USF1P22415 FCF1P2-201ENST00000415284 583 ntBASIC2.74□□□□□ -1.97
USF1P22415 YPEL5P1-201ENST00000419731 367 ntBASIC2.74□□□□□ -1.97
USF1P22415 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC2.74□□□□□ -1.97
USF1P22415 AL353705.1-201ENST00000433468 480 ntBASIC2.74□□□□□ -1.97
USF1P22415 RABEPKP1-201ENST00000440529 1026 ntBASIC2.74□□□□□ -1.97
USF1P22415 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms