Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 FAM35DP-201ENST00000323387 2712 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 RNA5SP130-201ENST00000364431 114 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 RN7SKP227-201ENST00000364445 330 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 PPIAP31-201ENST00000405422 495 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 RNA5SP317-201ENST00000410176 116 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 RNA5SP311-201ENST00000411290 116 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 MTND2P9-201ENST00000422293 931 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 BX119904.4-201ENST00000424402 301 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 DNAJC19P1-201ENST00000455312 319 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AL136097.1-201ENST00000456945 913 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 RPL30P9-201ENST00000465586 330 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 RN7SL860P-201ENST00000473738 223 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AL049830.2-201ENST00000480072 201 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC004069.2-201ENST00000505438 1114 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 RNA5SP315-201ENST00000516340 116 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 RNA5SP312-201ENST00000517068 116 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 MTCO2P15-201ENST00000532655 656 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC091516.1-201ENST00000549191 703 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC087465.1-201ENST00000560574 245 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC090186.1-201ENST00000605991 572 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC009570.1-201ENST00000609599 745 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AL450472.3-201ENST00000615578 367 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC008443.7-201ENST00000622195 246 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 MIR6810-201ENST00000622701 70 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 AL353746.1-201ENST00000566293 6881 ntBASIC3.18□□□□□ -1.9
FOXA2Q9Y261 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA2Q9Y261 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 RNU6-359P-201ENST00000365466 108 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 RPS3AP26-201ENST00000398259 784 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 HLFP1-201ENST00000402375 499 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 RPL21P65-201ENST00000406094 466 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AL356095.1-201ENST00000417217 199 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 RPL36AP36-201ENST00000418616 301 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 Z97055.1-201ENST00000419730 712 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 TMEM167AP1-201ENST00000423409 219 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 OR4K11P-201ENST00000431829 904 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 HSFY6P-201ENST00000445573 403 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 RPL23AP35-201ENST00000451906 501 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC007967.1-201ENST00000455422 1159 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 SNORD11.1-201ENST00000459482 85 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 RN7SL93P-201ENST00000463035 293 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC007537.2-201ENST00000472093 511 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 HMGN2P13-201ENST00000476476 274 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AL132838.2-201ENST00000492041 314 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 PRELID3BP5-201ENST00000508612 460 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 MTCYBP43-201ENST00000513621 740 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC061975.8-201ENST00000587058 721 ntBASIC3.17□□□□□ -1.9
FOXA2Q9Y261 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA2Q9Y261 AL391001.1-201ENST00000602747 715 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms