Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 SDAD1P1-202ENST00000524156 2051 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 CCT4P2-201ENST00000233836 1548 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 MIR1302-11-201ENST00000408051 138 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 MIR1302-9-201ENST00000408365 138 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 MIR1302-10-201ENST00000408734 138 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AMD1P2-201ENST00000412936 992 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 HMGB3P20-201ENST00000417997 600 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 USP9YP27-201ENST00000418455 438 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 BX890604.2-201ENST00000427883 474 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 FABP7P2-201ENST00000429946 379 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 NDUFA5P4-201ENST00000436704 385 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 SKP1P1-201ENST00000438081 489 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC023598.1-201ENST00000472521 361 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 ARL2BPP2-201ENST00000550907 489 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 NDUFB4P11-201ENST00000560510 395 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 MIR3667-201ENST00000581025 74 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC009977.1-201ENST00000586015 570 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 MIR1302-2-201ENST00000607096 138 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AL050343.2-201ENST00000607338 280 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.812-201ENST00000610788 101 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.784-201ENST00000613803 101 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.787-201ENST00000616522 101 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.780-201ENST00000617336 101 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.801-201ENST00000619005 101 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 MIR3662-201ENST00000637030 95 ntBASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.74□□□□□ -1.65
CLIP3Q96DZ5 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC104623.2-202ENST00000623477 4002 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 RNU6-483P-201ENST00000384088 108 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 RNU6-809P-201ENST00000384461 107 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 RPS3AP36-201ENST00000398190 775 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.625-201ENST00000411256 107 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AL358934.1-201ENST00000432346 324 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC108734.1-201ENST00000439549 399 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 GAPDHP17-201ENST00000449858 1001 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 PRPF38AP1-201ENST00000451976 933 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC133473.1-201ENST00000455173 299 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 MTCO1P42-201ENST00000457379 726 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 RPS29P22-201ENST00000472363 168 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 HMGN1P13-201ENST00000505795 138 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 GAPDHP56-201ENST00000506031 988 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 FGF7P4-201ENST00000509595 295 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 VWA8P1-201ENST00000510889 176 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC098976.1-201ENST00000513014 541 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.675-201ENST00000516389 149 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 AC022878.1-201ENST00000530684 149 ntBASIC4.73□□□□□ -1.65
CLIP3Q96DZ5 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms