Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 HMGB3P22-202ENST00000451823 572 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC016724.1-201ENST00000453215 421 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 snoU13.24-201ENST00000458998 104 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AL049714.1-201ENST00000466686 347 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 PPIAP19-201ENST00000486414 492 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC004453.1-201ENST00000487895 408 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC007182.2-201ENST00000489251 402 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC109462.1-201ENST00000491087 368 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC110792.1-201ENST00000491826 472 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RPS15AP36-201ENST00000492022 382 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 MLLT10P2-201ENST00000506434 249 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 KLHL2P1-201ENST00000508691 521 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 SSX6-203ENST00000509958 336 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 SNORD46.2-201ENST00000516021 102 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RNU6-314P-201ENST00000516574 104 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RNU6-445P-201ENST00000516949 107 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 RNU6-64P-201ENST00000517119 105 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC005363.1-201ENST00000530779 351 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC109635.4-202ENST00000531666 412 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 CCNG2P1-201ENST00000549521 1000 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC124947.2-202ENST00000552735 133 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC027807.1-201ENST00000559921 996 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 TPRKBP2-201ENST00000565969 475 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC015720.2-201ENST00000567709 334 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC010547.6-201ENST00000571789 193 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 HCG18-243ENST00000602498 327 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC126118.1-201ENST00000607744 628 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 TUG1_2.1-201ENST00000614234 87 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AL118522.2-201ENST00000616045 615 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 MIR6861-201ENST00000618657 64 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC118658.2-201ENST00000618697 459 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 CR381653.2-201ENST00000624041 768 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 MIR6863-201ENST00000636112 90 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC138649.5-201ENST00000637456 137 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 MTCO1P11-201ENST00000429111 1528 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AC138915.3-201ENST00000562908 1389 ntBASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC28AQ8IWP9 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 MFSD4BP1-201ENST00000513330 1552 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AP001350.1-201ENST00000601906 1524 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 RNU6-173P-201ENST00000364215 104 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 RN7SKP177-201ENST00000410567 355 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 RN7SKP159-201ENST00000410657 292 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 RNA5SP107-201ENST00000411358 122 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 EIF4A1P7-201ENST00000421800 1220 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 MTCO2P11-201ENST00000431069 680 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 GSTM5P1-201ENST00000434751 660 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AL138899.2-201ENST00000439139 499 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 OR7E125P-201ENST00000443450 846 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AC016696.1-201ENST00000446949 318 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AC023194.1-201ENST00000493084 308 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 SAP18P1-201ENST00000512058 390 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AC023141.12-201ENST00000512399 199 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AL117351.2-201ENST00000513571 157 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AC114797.1-201ENST00000514003 728 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 RN7SKP276-201ENST00000516242 268 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 IGHVII-60-1-201ENST00000519079 256 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AP003072.2-201ENST00000527756 676 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 TOMM20P2-201ENST00000540082 421 ntBASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC28AQ8IWP9 FKBP1BP1-201ENST00000553366 325 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms