Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNA5SP56-201ENST00000410277 118 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.98□□□□□ -2.09
FOXA3P55318 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.98□□□□□ -2.09
FOXA3P55318 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
FOXA3P55318 AL671855.1-201ENST00000446875 1203 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 PRDX3P3-201ENST00000447765 522 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC1.98□□□□□ -2.09
FOXA3P55318 CACYBPP2-201ENST00000453625 678 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC1.98□□□□□ -2.09
FOXA3P55318 AC073901.1-201ENST00000462471 408 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 AC133134.1-201ENST00000466800 359 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 AC107398.1-201ENST00000486904 505 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC1.98□□□□□ -2.09
FOXA3P55318 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC1.98□□□□□ -2.09
FOXA3P55318 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
FOXA3P55318 OR4R1P-201ENST00000529879 463 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC1.98□□□□□ -2.09
FOXA3P55318 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.98□□□□□ -2.09
FOXA3P55318 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC1.98□□□□□ -2.09
FOXA3P55318 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 AL360181.4-201ENST00000621752 134 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 AC097372.4-201ENST00000625025 466 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
FOXA3P55318 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC1.98□□□□□ -2.09
FOXA3P55318 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.98□□□□□ -2.09
FOXA3P55318 SGO1P2-201ENST00000429458 1589 ntBASIC1.98□□□□□ -2.09
FOXA3P55318 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC1.97□□□□□ -2.09
FOXA3P55318 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA3P55318 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA3P55318 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
FOXA3P55318 SNORA67.1-201ENST00000364749 141 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 SNORA62.3-201ENST00000365110 153 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 U8.8-201ENST00000365399 135 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 SNORA1.3-201ENST00000384676 136 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.97□□□□□ -2.09
FOXA3P55318 RPS4XP7-201ENST00000406274 780 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 HSFY1P1-201ENST00000423928 1178 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 AC096632.1-201ENST00000427395 310 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 AC005326.1-201ENST00000429197 123 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC1.97□□□□□ -2.09
FOXA3P55318 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA3P55318 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA3P55318 AC015908.1-201ENST00000478739 476 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 RN7SL504P-201ENST00000494496 287 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.97□□□□□ -2.09
FOXA3P55318 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA3P55318 NAMPTP2-201ENST00000505629 1115 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 RN7SKP283-201ENST00000517197 270 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA3P55318 AC025857.1-201ENST00000525252 377 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 OR10V3P-201ENST00000525712 725 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA3P55318 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA3P55318 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA3P55318 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.97□□□□□ -2.09
FOXA3P55318 MIR5004-201ENST00000579078 107 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 MIR4635-201ENST00000583759 79 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 AL669831.4-202ENST00000590817 238 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 AC119501.1-201ENST00000603646 475 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 BNIP3P11-201ENST00000603878 563 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 AL161756.2-201ENST00000604597 246 ntBASIC1.97□□□□□ -2.09
FOXA3P55318 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA3P55318 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
FOXA3P55318 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA3P55318 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA3P55318 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
FOXA3P55318 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA3P55318 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC1.97□□□□□ -2.09
FOXA3P55318 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA3P55318 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.96□□□□□ -2.1
FOXA3P55318 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
FOXA3P55318 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA3P55318 RNU6-374P-201ENST00000364146 108 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 RNU6-98P-201ENST00000384173 107 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 OFD1P18Y-201ENST00000420889 959 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA3P55318 AC022018.1-201ENST00000430685 241 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA3P55318 SETP11-201ENST00000473027 690 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXA3P55318 AC006445.1-201ENST00000491925 405 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 RN7SKP157-201ENST00000516174 282 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 RNA5SP82-201ENST00000516707 92 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 AC100870.1-201ENST00000522035 505 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 MTCO1P47-201ENST00000523889 1271 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA3P55318 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
FOXA3P55318 ARL1-211ENST00000551828 776 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXA3P55318 SERPINE4P-201ENST00000554978 281 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA3P55318 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA3P55318 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA3P55318 AC008739.2-201ENST00000597006 317 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 AC245517.5-201ENST00000611529 162 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXA3P55318 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXA3P55318 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.96□□□□□ -2.1
FOXA3P55318 AL512283.1-201ENST00000606756 1384 ntBASIC1.96□□□□□ -2.1
FOXA3P55318 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms