Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AC093392.2-201ENST00000450682 337 ntBASIC4.36□□□□□ -1.71
COPB1P53618 EIF4A1P11-201ENST00000451239 222 ntBASIC4.36□□□□□ -1.71
COPB1P53618 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.36□□□□□ -1.71
COPB1P53618 AL121877.1-201ENST00000453704 622 ntBASIC4.36□□□□□ -1.71
COPB1P53618 RPL30P11-201ENST00000495304 339 ntBASIC4.36□□□□□ -1.71
COPB1P53618 AC138853.1-201ENST00000503549 823 ntBASIC4.36□□□□□ -1.71
COPB1P53618 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.36□□□□□ -1.71
COPB1P53618 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.36□□□□□ -1.71
COPB1P53618 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.36□□□□□ -1.71
COPB1P53618 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COPB1P53618 MTCO1P35-201ENST00000515270 228 ntBASIC4.36□□□□□ -1.71
COPB1P53618 RN7SKP21-201ENST00000516503 220 ntBASIC4.36□□□□□ -1.71
COPB1P53618 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.36□□□□□ -1.71
COPB1P53618 AP004247.1-201ENST00000531556 1289 ntBASIC4.36□□□□□ -1.71
COPB1P53618 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.36□□□□□ -1.71
COPB1P53618 AC068587.4-201ENST00000533893 186 ntBASIC4.36□□□□□ -1.71
COPB1P53618 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.36□□□□□ -1.71
COPB1P53618 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.36□□□□□ -1.71
COPB1P53618 AC087481.2-201ENST00000565492 330 ntBASIC4.36□□□□□ -1.71
COPB1P53618 MIR3160-1-201ENST00000577972 85 ntBASIC4.36□□□□□ -1.71
COPB1P53618 MIR5697-201ENST00000578045 78 ntBASIC4.36□□□□□ -1.71
COPB1P53618 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COPB1P53618 BNIP3P11-201ENST00000603878 563 ntBASIC4.36□□□□□ -1.71
COPB1P53618 AC090948.2-201ENST00000607363 564 ntBASIC4.36□□□□□ -1.71
COPB1P53618 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.36□□□□□ -1.71
COPB1P53618 AC103710.4-201ENST00000609301 899 ntBASIC4.36□□□□□ -1.71
COPB1P53618 AL359535.1-201ENST00000612100 1087 ntBASIC4.36□□□□□ -1.71
COPB1P53618 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.36□□□□□ -1.71
COPB1P53618 AC114781.5-201ENST00000615297 108 ntBASIC4.36□□□□□ -1.71
COPB1P53618 U6atac.1-201ENST00000616025 117 ntBASIC4.36□□□□□ -1.71
COPB1P53618 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.36□□□□□ -1.71
COPB1P53618 MIR3653-201ENST00000625572 110 ntBASIC4.36□□□□□ -1.71
COPB1P53618 CRYM-AS1-204ENST00000637983 556 ntBASIC4.36□□□□□ -1.71
COPB1P53618 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COPB1P53618 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COPB1P53618 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.36□□□□□ -1.71
COPB1P53618 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.36□□□□□ -1.71
COPB1P53618 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.36□□□□□ -1.71
COPB1P53618 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COPB1P53618 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.35□□□□□ -1.71
COPB1P53618 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.35□□□□□ -1.71
COPB1P53618 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COPB1P53618 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COPB1P53618 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.35□□□□□ -1.71
COPB1P53618 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
COPB1P53618 OR11H4-201ENST00000315409 1082 ntBASIC4.35□□□□□ -1.71
COPB1P53618 RNA5SP399-201ENST00000364003 117 ntBASIC4.35□□□□□ -1.71
COPB1P53618 RNU1-85P-201ENST00000364127 164 ntBASIC4.35□□□□□ -1.71
COPB1P53618 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.35□□□□□ -1.71
COPB1P53618 SNORA70C-201ENST00000384538 135 ntBASIC4.35□□□□□ -1.71
COPB1P53618 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.35□□□□□ -1.71
COPB1P53618 RNU6-603P-201ENST00000411403 107 ntBASIC4.35□□□□□ -1.71
COPB1P53618 AL133384.1-201ENST00000412744 351 ntBASIC4.35□□□□□ -1.71
COPB1P53618 RPS3AP9-201ENST00000417027 792 ntBASIC4.35□□□□□ -1.71
COPB1P53618 RPS27AP12-201ENST00000429552 465 ntBASIC4.35□□□□□ -1.71
COPB1P53618 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.35□□□□□ -1.71
COPB1P53618 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.35□□□□□ -1.71
COPB1P53618 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.35□□□□□ -1.71
COPB1P53618 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC4.35□□□□□ -1.71
COPB1P53618 LSM1P1-201ENST00000438629 273 ntBASIC4.35□□□□□ -1.71
COPB1P53618 AC083863.1-201ENST00000438811 231 ntBASIC4.35□□□□□ -1.71
COPB1P53618 RPL23AP16-201ENST00000441715 421 ntBASIC4.35□□□□□ -1.71
COPB1P53618 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.35□□□□□ -1.71
COPB1P53618 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.35□□□□□ -1.71
COPB1P53618 RPS17P13-201ENST00000448974 407 ntBASIC4.35□□□□□ -1.71
COPB1P53618 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.35□□□□□ -1.71
COPB1P53618 NUTF2P7-201ENST00000453086 375 ntBASIC4.35□□□□□ -1.71
COPB1P53618 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC4.35□□□□□ -1.71
COPB1P53618 AC091167.1-201ENST00000492017 396 ntBASIC4.35□□□□□ -1.71
COPB1P53618 RPS27AP13-201ENST00000498403 237 ntBASIC4.35□□□□□ -1.71
COPB1P53618 TMEM251P1-201ENST00000503717 318 ntBASIC4.35□□□□□ -1.71
COPB1P53618 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.35□□□□□ -1.71
COPB1P53618 POU5F1P7-201ENST00000508759 541 ntBASIC4.35□□□□□ -1.71
COPB1P53618 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.35□□□□□ -1.71
COPB1P53618 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COPB1P53618 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.35□□□□□ -1.71
COPB1P53618 MTND5P4-201ENST00000514978 288 ntBASIC4.35□□□□□ -1.71
COPB1P53618 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.35□□□□□ -1.71
COPB1P53618 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COPB1P53618 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.35□□□□□ -1.71
COPB1P53618 OR6C73P-201ENST00000546432 358 ntBASIC4.35□□□□□ -1.71
COPB1P53618 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.35□□□□□ -1.71
COPB1P53618 AC007224.1-201ENST00000564410 144 ntBASIC4.35□□□□□ -1.71
COPB1P53618 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.35□□□□□ -1.71
COPB1P53618 MIR544B-201ENST00000582372 78 ntBASIC4.35□□□□□ -1.71
COPB1P53618 MIR4307-201ENST00000582802 84 ntBASIC4.35□□□□□ -1.71
COPB1P53618 AC110743.1-201ENST00000584870 478 ntBASIC4.35□□□□□ -1.71
COPB1P53618 BCRP9-201ENST00000605312 388 ntBASIC4.35□□□□□ -1.71
COPB1P53618 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.35□□□□□ -1.71
COPB1P53618 AC104010.1-201ENST00000616889 150 ntBASIC4.35□□□□□ -1.71
COPB1P53618 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.35□□□□□ -1.71
COPB1P53618 AC093591.3-201ENST00000634516 308 ntBASIC4.35□□□□□ -1.71
COPB1P53618 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
COPB1P53618 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COPB1P53618 AP002907.1-201ENST00000606361 1430 ntBASIC4.35□□□□□ -1.71
COPB1P53618 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
COPB1P53618 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COPB1P53618 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.35□□□□□ -1.71
COPB1P53618 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.34□□□□□ -1.71
COPB1P53618 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms