Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 AL359893.1-201ENST00000447628 1580 ntBASIC3.67□□□□□ -1.82
CCDC88BA6NC98 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 AL049830.2-201ENST00000480072 201 ntBASIC3.67□□□□□ -1.82
CCDC88BA6NC98 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 VN1R79P-201ENST00000593540 513 ntBASIC3.67□□□□□ -1.82
CCDC88BA6NC98 MIR6132-201ENST00000622083 109 ntBASIC3.67□□□□□ -1.82
CCDC88BA6NC98 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 MTND4P35-201ENST00000604257 1375 ntBASIC3.67□□□□□ -1.82
CCDC88BA6NC98 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 RPL31P45-201ENST00000419532 356 ntBASIC3.67□□□□□ -1.82
CCDC88BA6NC98 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 AP000926.3-201ENST00000497201 299 ntBASIC3.67□□□□□ -1.82
CCDC88BA6NC98 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC3.66□□□□□ -1.82
CCDC88BA6NC98 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC88BA6NC98 DEFA7P-201ENST00000382676 285 ntBASIC3.66□□□□□ -1.82
CCDC88BA6NC98 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC88BA6NC98 VTA1P2-201ENST00000520205 911 ntBASIC3.66□□□□□ -1.82
CCDC88BA6NC98 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC88BA6NC98 AC011494.1-201ENST00000596454 237 ntBASIC3.66□□□□□ -1.82
CCDC88BA6NC98 EXOC5P1-201ENST00000510543 1969 ntBASIC3.66□□□□□ -1.82
CCDC88BA6NC98 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC88BA6NC98 RNU1-17P-201ENST00000363022 152 ntBASIC3.65□□□□□ -1.83
CCDC88BA6NC98 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC88BA6NC98 AMZ2P1-203ENST00000565833 850 ntBASIC3.65□□□□□ -1.83
CCDC88BA6NC98 AC067852.7-201ENST00000623270 535 ntBASIC3.65□□□□□ -1.83
CCDC88BA6NC98 AC025125.1-201ENST00000624743 1922 ntBASIC3.65□□□□□ -1.83
CCDC88BA6NC98 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
CCDC88BA6NC98 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC88BA6NC98 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC88BA6NC98 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC88BA6NC98 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC88BA6NC98 AC117522.2-201ENST00000510049 657 ntBASIC3.64□□□□□ -1.83
CCDC88BA6NC98 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC88BA6NC98 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.64□□□□□ -1.83
CCDC88BA6NC98 AC090819.1-201ENST00000523800 1111 ntBASIC3.64□□□□□ -1.83
CCDC88BA6NC98 TPMTP1-201ENST00000592307 737 ntBASIC3.64□□□□□ -1.83
CCDC88BA6NC98 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC88BA6NC98 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC88BA6NC98 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88BA6NC98 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
CCDC88BA6NC98 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88BA6NC98 RNU6-328P-201ENST00000390887 106 ntBASIC3.63□□□□□ -1.83
CCDC88BA6NC98 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC88BA6NC98 AC044913.1-201ENST00000557200 430 ntBASIC3.63□□□□□ -1.83
CCDC88BA6NC98 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC88BA6NC98 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88BA6NC98 AC073348.1-201ENST00000623002 331 ntBASIC3.63□□□□□ -1.83
CCDC88BA6NC98 ISCA1P6-201ENST00000427740 390 ntBASIC3.62□□□□□ -1.83
CCDC88BA6NC98 AL035551.1-201ENST00000446931 348 ntBASIC3.62□□□□□ -1.83
CCDC88BA6NC98 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC88BA6NC98 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC88BA6NC98 MIR5002-201ENST00000584713 97 ntBASIC3.62□□□□□ -1.83
CCDC88BA6NC98 AC013562.2-201ENST00000611632 603 ntBASIC3.62□□□□□ -1.83
CCDC88BA6NC98 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC88BA6NC98 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC88BA6NC98 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC88BA6NC98 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC88BA6NC98 RWDD4P2-201ENST00000426392 563 ntBASIC3.61□□□□□ -1.83
CCDC88BA6NC98 SAR1AP4-201ENST00000429225 591 ntBASIC3.61□□□□□ -1.83
CCDC88BA6NC98 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC88BA6NC98 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC88BA6NC98 RWDD4P1-201ENST00000488019 565 ntBASIC3.61□□□□□ -1.83
CCDC88BA6NC98 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC88BA6NC98 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.61□□□□□ -1.83
CCDC88BA6NC98 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.61□□□□□ -1.83
CCDC88BA6NC98 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC88BA6NC98 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC88BA6NC98 MIR6073-201ENST00000352083 89 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 Y_RNA.4-201ENST00000362333 112 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC88BA6NC98 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC88BA6NC98 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC88BA6NC98 AC008126.1-201ENST00000549019 480 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC88BA6NC98 NF1P5-201ENST00000588287 448 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 AC016727.1-205ENST00000605437 569 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 AC099778.2-201ENST00000610904 211 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 ADAM3A-203ENST00000461344 2157 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 AC010733.2-201ENST00000589496 5702 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 RNU6-178P-201ENST00000384631 104 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 AL138785.1-201ENST00000425821 331 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC88BA6NC98 AC110588.1-201ENST00000559699 137 ntBASIC3.6□□□□□ -1.83
CCDC88BA6NC98 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC88BA6NC98 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC88BA6NC98 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC88BA6NC98 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC88BA6NC98 Y_RNA.238-201ENST00000364441 102 ntBASIC3.59□□□□□ -1.84
CCDC88BA6NC98 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.59□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms