Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm10566-201ENSMUST00000086739 996 ntBASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Prpf40aQ9R1C7 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
Prpf40aQ9R1C7 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Prpf40aQ9R1C7 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Prpf40aQ9R1C7 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Prpf40aQ9R1C7 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 AC122351.1-201ENSMUST00000220467 126 ntBASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Prpf40aQ9R1C7 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Prpf40aQ9R1C7 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Prpf40aQ9R1C7 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.97■□□□□ 0.47
Prpf40aQ9R1C7 Phf7-203ENSMUST00000226565 1971 ntBASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms