Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn11aQ9R053 Gm6184-201ENSMUST00000120403 1261 ntBASIC19.32■□□□□ 0.68
Scn11aQ9R053 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC19.32■□□□□ 0.68
Scn11aQ9R053 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn11aQ9R053 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Scn11aQ9R053 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 AC154527.4-201ENSMUST00000224364 1667 ntBASIC19.3■□□□□ 0.68
Scn11aQ9R053 Gm14140-201ENSMUST00000119999 995 ntBASIC19.3■□□□□ 0.68
Scn11aQ9R053 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Gm3928-201ENSMUST00000121141 1307 ntBASIC19.3■□□□□ 0.68
Scn11aQ9R053 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC19.3■□□□□ 0.68
Scn11aQ9R053 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Gm6257-201ENSMUST00000163864 910 ntBASIC19.29■□□□□ 0.68
Scn11aQ9R053 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scn11aQ9R053 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC19.29■□□□□ 0.68
Scn11aQ9R053 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Wdyhv1-206ENSMUST00000227142 786 ntBASIC19.28■□□□□ 0.68
Scn11aQ9R053 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Scn11aQ9R053 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC19.27■□□□□ 0.68
Scn11aQ9R053 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Scn11aQ9R053 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC19.27■□□□□ 0.68
Scn11aQ9R053 Gm27628-201ENSMUST00000184911 107 ntBASIC19.27■□□□□ 0.68
Scn11aQ9R053 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Scn11aQ9R053 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Scn11aQ9R053 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Scn11aQ9R053 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.27■□□□□ 0.68
Scn11aQ9R053 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Scn11aQ9R053 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn11aQ9R053 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Scn11aQ9R053 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn11aQ9R053 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Scn11aQ9R053 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn11aQ9R053 Gm43935-201ENSMUST00000203569 1050 ntBASIC19.27■□□□□ 0.67
Scn11aQ9R053 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn11aQ9R053 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn11aQ9R053 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn11aQ9R053 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms