Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ddx56Q9D0R4 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.21■□□□□ 0.34
Ddx56Q9D0R4 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
Ddx56Q9D0R4 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Ddx56Q9D0R4 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Gm36967-201ENSMUST00000193814 266 ntBASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Gm45412-201ENSMUST00000210217 2275 ntBASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ddx56Q9D0R4 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ddx56Q9D0R4 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Mir7071-201ENSMUST00000184847 69 ntBASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC17.18■□□□□ 0.34
Ddx56Q9D0R4 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms