Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Gm9988-201ENSMUST00000069786 435 ntBASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc9Q8VC31 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc9Q8VC31 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Ccdc9Q8VC31 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Ccdc9Q8VC31 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc9Q8VC31 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Gm27528-202ENSMUST00000222916 2012 ntBASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Gm38205-201ENSMUST00000192243 258 ntBASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc9Q8VC31 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Phf7-203ENSMUST00000226565 1971 ntBASIC19.74■□□□□ 0.75
Ccdc9Q8VC31 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Ccdc9Q8VC31 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc9Q8VC31 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc9Q8VC31 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC19.73■□□□□ 0.75
Ccdc9Q8VC31 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc9Q8VC31 Gm45133-201ENSMUST00000207548 2773 ntBASIC19.73■□□□□ 0.75
Ccdc9Q8VC31 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc9Q8VC31 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc9Q8VC31 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Ccdc9Q8VC31 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms