Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm11860-201ENSMUST00000122346 1010 ntBASIC15.24■□□□□ 0.03
ShhQ62226 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
ShhQ62226 Il3ra-202ENSMUST00000223589 738 ntBASIC15.24■□□□□ 0.03
ShhQ62226 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC15.24■□□□□ 0.03
ShhQ62226 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
ShhQ62226 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
ShhQ62226 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
ShhQ62226 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
ShhQ62226 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 AL590614.2-201ENSMUST00000225374 1937 ntBASIC15.23■□□□□ 0.03
ShhQ62226 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
ShhQ62226 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC15.23■□□□□ 0.03
ShhQ62226 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
ShhQ62226 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
ShhQ62226 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ShhQ62226 Olfr129-201ENSMUST00000122318 993 ntBASIC15.23■□□□□ 0.03
ShhQ62226 Gm11452-201ENSMUST00000122376 690 ntBASIC15.23■□□□□ 0.03
ShhQ62226 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC15.23■□□□□ 0.03
ShhQ62226 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC15.23■□□□□ 0.03
ShhQ62226 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ShhQ62226 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ShhQ62226 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC15.23■□□□□ 0.03
ShhQ62226 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Wnt10b-204ENSMUST00000226655 1807 ntBASIC15.22■□□□□ 0.03
ShhQ62226 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ShhQ62226 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC15.22■□□□□ 0.03
ShhQ62226 Gm5712-201ENSMUST00000199748 1043 ntBASIC15.22■□□□□ 0.03
ShhQ62226 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
ShhQ62226 Gm45244-201ENSMUST00000211328 2200 ntBASIC15.22■□□□□ 0.03
ShhQ62226 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
ShhQ62226 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ShhQ62226 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC15.22■□□□□ 0.03
ShhQ62226 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ShhQ62226 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ShhQ62226 Hivep3-201ENSMUST00000084306 2973 ntBASIC15.21■□□□□ 0.03
ShhQ62226 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC15.21■□□□□ 0.03
ShhQ62226 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ShhQ62226 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
ShhQ62226 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ShhQ62226 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
ShhQ62226 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ShhQ62226 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ShhQ62226 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ShhQ62226 Gm37722-201ENSMUST00000193757 208 ntBASIC15.21■□□□□ 0.03
ShhQ62226 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ShhQ62226 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ShhQ62226 Gm36858-201ENSMUST00000194501 2391 ntBASIC15.21■□□□□ 0.03
ShhQ62226 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
ShhQ62226 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
ShhQ62226 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
ShhQ62226 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
ShhQ62226 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
ShhQ62226 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
ShhQ62226 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ShhQ62226 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ShhQ62226 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
ShhQ62226 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
ShhQ62226 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
ShhQ62226 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ShhQ62226 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.2■□□□□ 0.02
ShhQ62226 Gm10052-201ENSMUST00000168019 960 ntBASIC15.2■□□□□ 0.02
ShhQ62226 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC15.2■□□□□ 0.02
ShhQ62226 Gm7729-201ENSMUST00000050143 801 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms