Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Gm11950-201ENSMUST00000121615 838 ntBASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Gm17808-201ENSMUST00000200859 894 ntBASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.52■□□□□ 0.4
Upf3bQ3ULL6 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Upf3bQ3ULL6 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Upf3bQ3ULL6 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.52■□□□□ 0.39
Upf3bQ3ULL6 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Upf3bQ3ULL6 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Upf3bQ3ULL6 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Upf3bQ3ULL6 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Upf3bQ3ULL6 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf3bQ3ULL6 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf3bQ3ULL6 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Gm37166-201ENSMUST00000195473 2474 ntBASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.49■□□□□ 0.39
Upf3bQ3ULL6 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms