Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Limch1Q3UH68 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Limch1Q3UH68 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Limch1Q3UH68 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Limch1Q3UH68 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Limch1Q3UH68 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Gm18115-201ENSMUST00000221209 621 ntBASIC19.24■□□□□ 0.67
Limch1Q3UH68 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Limch1Q3UH68 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Limch1Q3UH68 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limch1Q3UH68 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limch1Q3UH68 Gm26039-201ENSMUST00000158152 144 ntBASIC19.23■□□□□ 0.67
Limch1Q3UH68 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC19.23■□□□□ 0.67
Limch1Q3UH68 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC19.23■□□□□ 0.67
Limch1Q3UH68 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Limch1Q3UH68 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limch1Q3UH68 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limch1Q3UH68 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limch1Q3UH68 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Limch1Q3UH68 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Gm18669-201ENSMUST00000216049 778 ntBASIC19.22■□□□□ 0.67
Limch1Q3UH68 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC19.22■□□□□ 0.67
Limch1Q3UH68 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC19.22■□□□□ 0.67
Limch1Q3UH68 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Limch1Q3UH68 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms