Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim63Q38HM4 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim63Q38HM4 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim63Q38HM4 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim63Q38HM4 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC13.57□□□□□ -0.24
Trim63Q38HM4 AC163637.1-201ENSMUST00000215491 1894 ntBASIC13.57□□□□□ -0.24
Trim63Q38HM4 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim63Q38HM4 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Gm43759-201ENSMUST00000196925 1261 ntBASIC13.56□□□□□ -0.24
Trim63Q38HM4 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim63Q38HM4 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Gm44291-201ENSMUST00000203102 2865 ntBASIC13.55□□□□□ -0.24
Trim63Q38HM4 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim63Q38HM4 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim63Q38HM4 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim63Q38HM4 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim63Q38HM4 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim63Q38HM4 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim63Q38HM4 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms